Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12-
03] 365 sequences; 33,389,656 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq314 132 3e-26
seq3 125 5e-24
seq144 84.2 2e-11
>seq314
Length=39162
Score = 132 bits (146), Expect = 3e-26
Identities = 170/233 (73%), Gaps = 1/233 (0%)
Strand=Plus/Minus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || || | || ||||||||||| || || || |||||| ||||||||||| ||
Sbjct 39012 CATGCCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTC 38953
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
| ||| ||| |||| || |||||||| || || |||||||| |||||||| || |
Sbjct 38952 GCTGAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGG 38893
Query 44227 AGGCA-CACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATT 44285
||| | || ||||| ||| ||||| ||| | | | |||||||| | || |
Sbjct 38892 AGGGATTCCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACT 38833
Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
| ||||| | || || ||||| || ||||||||||| |||||||| ||||||
Sbjct 38832 CGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 38780
>seq3
Length=57953
Score = 125 bits (138), Expect = 5e-24
Identities = 170/234 (73%), Gaps = 5/234 (2%)
Strand=Plus/Minus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || || | || | || ||| |||||||| || |||||| ||||||||||||||
Sbjct 50791 CATGCCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATC 50732
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
| || || | || || |||||||||||| | |||||||| |||||||| || |
Sbjct 50731 CGAAAGAGTACGACCATCCTCGAGCTGCTTCCCG-CGAAGATCAAGCGCTGCTGGTCGGG 50673
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGAT 44284
||| | || ||||| ||| ||||| ||| || ||| | || ||||| | ||
Sbjct 50672 AGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGT--CGATCGTGTCCGACGAC 50615
Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
|| ||||| | || || ||||| || ||||||||||| |||||||| ||||||
Sbjct 50614 TCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 50561
Score = 96.9 bits (106), Expect = 2e-15
Identities = 97/126 (77%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||||||| ||||| ||| || |||||||||||||| | || ||| |||| ||
Sbjct 51316 CACCAGGTGCAGCGTAGACTCTTTCTGGATGTTGTAATCTGAAAGCGTGCGTCCGTCCTC 51257
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
||||||||||| || |||||||| |||||||| || | ||| | ||| ||||| |||
Sbjct 51256 AAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTG 51197
Query 44248 TATCTT 44253
|||||
Sbjct 51196 GATCTT 51191
>seq144
Length=22955
Score = 84.2 bits (92), Expect = 2e-11
Identities = 129/184 (70%), Gaps = 0/184 (0%)
Strand=Plus/Minus
Query 44109 TTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG 44168
|||| || | || ||||| || ||||| || || |||||||| |||||||||||
Sbjct 215 TTCCACCGCGCAACCTCAAAACGAGGTGCAGGGTCGATTCCTTTTGAATGTTGTAATCTT 156
Query 44169 CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228
|| ||| |||| || ||||||||||| || |||||||| |||||||| || | |
Sbjct 155 GAAGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGCG 96
Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCA 44288
| | || ||||| ||| ||||| ||| | | | || ||||||| || || |
Sbjct 95 GGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGA 36
Query 44289 CCTC 44292
||||
Sbjct 35 CCTC 32
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359988798605205
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |