Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq314 132 3e-26 seq3 125 5e-24 seq144 84.2 2e-11 >seq314 Length=39162 Score = 132 bits (146), Expect = 3e-26 Identities = 170/233 (73%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || ||||||||||| || || || |||||| ||||||||||| || Sbjct 39012 CATGCCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTC 38953 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| |||| || |||||||| || || |||||||| |||||||| || | Sbjct 38952 GCTGAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGG 38893 Query 44227 AGGCA-CACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATT 44285 ||| | || ||||| ||| ||||| ||| | | | |||||||| | || | Sbjct 38892 AGGGATTCCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACT 38833 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||| | || || ||||| || ||||||||||| |||||||| |||||| Sbjct 38832 CGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 38780 >seq3 Length=57953 Score = 125 bits (138), Expect = 5e-24 Identities = 170/234 (73%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || | || ||| |||||||| || |||||| |||||||||||||| Sbjct 50791 CATGCCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATC 50732 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || || | || || |||||||||||| | |||||||| |||||||| || | Sbjct 50731 CGAAAGAGTACGACCATCCTCGAGCTGCTTCCCG-CGAAGATCAAGCGCTGCTGGTCGGG 50673 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGAT 44284 ||| | || ||||| ||| ||||| ||| || ||| | || ||||| | || Sbjct 50672 AGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGT--CGATCGTGTCCGACGAC 50615 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || ||||| | || || ||||| || ||||||||||| |||||||| |||||| Sbjct 50614 TCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 50561 Score = 96.9 bits (106), Expect = 2e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| ||||| ||| || |||||||||||||| | || ||| |||| || Sbjct 51316 CACCAGGTGCAGCGTAGACTCTTTCTGGATGTTGTAATCTGAAAGCGTGCGTCCGTCCTC 51257 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||||| || |||||||| |||||||| || | ||| | ||| ||||| ||| Sbjct 51256 AAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTG 51197 Query 44248 TATCTT 44253 ||||| Sbjct 51196 GATCTT 51191 >seq144 Length=22955 Score = 84.2 bits (92), Expect = 2e-11 Identities = 129/184 (70%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 44109 TTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG 44168 |||| || | || ||||| || ||||| || || |||||||| ||||||||||| Sbjct 215 TTCCACCGCGCAACCTCAAAACGAGGTGCAGGGTCGATTCCTTTTGAATGTTGTAATCTT 156 Query 44169 CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 || ||| |||| || ||||||||||| || |||||||| |||||||| || | | Sbjct 155 GAAGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGCG 96 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | | || ||||| ||| ||||| ||| | | | || ||||||| || || | Sbjct 95 GGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGA 36 Query 44289 CCTC 44292 |||| Sbjct 35 CCTC 32 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359988798605205