Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq314 150 4e-31 seq3 147 5e-30 seq144 140 8e-28 seq98 120 7e-22 seq361 118 3e-21 seq94 116 9e-21 >seq314 Length=39162 Score = 150 bits (166), Expect = 4e-31 Identities = 162/213 (76%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||||||||| || || ||| Sbjct 38784 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGAC 38843 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGA-AGGAATCCCTCCGGACCAGCA 178042 |||||||| |||||||| |||||||||||||| || ||||||||||| |||||||| Sbjct 38844 ACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGGAATCCCTCCCGACCAGCA 38903 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 || | |||||||| || || ||||| || || || | || || ||| || ||| | Sbjct 38904 GCGCTTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACGCTCAGCGACTACAACAT 38963 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAG 178135 ||| || || || ||||| ||||| || ||||| Sbjct 38964 CCAGAAGGAGTCTACACTCCATCTGGTGTTGAG 38996 >seq3 Length=57953 Score = 147 bits (162), Expect = 5e-30 Identities = 157/206 (76%), Gaps = 1/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||||||||| || || ||| Sbjct 50565 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTCGGAC 50624 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| |||||||||||||| || || |||||||| |||||||| Sbjct 50625 ACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAGCAG 50684 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||| ||| || |||||||| ||||| | |||||| | ||||| ||| || Sbjct 50685 CGCTTGATCTTCG-CGGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAACATC 50743 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 50744 CAGAAGGAGTCGACCCTTCACCTCGT 50769 >seq144 Length=22955 Score = 140 bits (154), Expect = 8e-28 Identities = 139/180 (77%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 177956 GATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGA 178015 ||||||||||||||| || || ||||| ||||| |||||||| ||||||||||| Sbjct 22 GATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGA 81 Query 178016 CAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075 ||| || || ||||| || |||||||| || | |||||||| || || ||||| || || Sbjct 82 CAAGGAGGGCATCCCGCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTTGAGGA 141 Query 178076 TGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAG 178135 ||| | || ||| ||||| ||| | ||||| ||||| || ||||| || |||||||| Sbjct 142 CGGACGCACGCTTCAAGATTACAACATTCAAAAGGAATCGACCCTGCACCTCGTTTTGAG 201 >seq98 Length=54307 Score = 120 bits (132), Expect = 7e-22 Identities = 131/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 177956 GATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGA 178015 ||||||||||||||| || || ||||| ||||| |||||||| ||||| ||||| Sbjct 35535 GATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACGTCAAGGCCAAGATCCAGGA 35476 Query 178016 CAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075 ||| || || ||||| || |||||||| || || ||||| ||||| || |||||||| || Sbjct 35475 CAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGA 35416 Query 178076 TGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || | |||||| | || || ||| | || || || || || || || || || Sbjct 35415 CGGCCGCACTCTTTCTGACTACAACATTCAGAAGGAGTCGACCCTTCACCTCGT 35362 >seq361 Length=17270 Score = 118 bits (130), Expect = 3e-21 Identities = 101/125 (81%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || ||||||||||| |||||||| || ||||||||||| || || Sbjct 9278 AAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCGCGGGGAAG 9219 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||||| ||||| | |||||| | ||||| ||| |||| ||||| || || || || Sbjct 9218 CAGCTCGAGGATGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACCCTCCAC 9159 Query 178125 CTTGT 178129 || || Sbjct 9158 CTCGT 9154 Score = 113 bits (124), Expect = 1e-19 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || ||||||||||| |||||||| || ||||||||||| || || Sbjct 8838 AAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCGCGGGGAAG 8779 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||||| || || | |||||| | ||||| ||| |||| ||||| || || || || Sbjct 8778 CAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACCCTCCAC 8719 Query 178125 CTTGT 178129 || || Sbjct 8718 CTCGT 8714 >seq94 Length=311871 Score = 116 bits (128), Expect = 9e-21 Identities = 130/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 177956 GATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGA 178015 ||||||||||||||| || || ||||| ||||| |||||||| ||||||||||| Sbjct 106171 GATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGA 106230 Query 178016 CAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075 ||| || || || || || |||||||| || | ||||||||||| || ||||| || || Sbjct 106231 CAAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGA 106290 Query 178076 TGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || | || || ||| |||||| | || || || || || ||||| || || Sbjct 106291 CGGGCGCACGCTCAGCGACTATAACATTCAGAAGGAGTCGACGCTGCACCTGGT 106344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203725570675810