Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12-
03] 365 sequences; 33,389,656 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq314 150 4e-31
seq3 147 5e-30
seq144 140 8e-28
seq98 120 7e-22
seq361 118 3e-21
seq94 116 9e-21
>seq314
Length=39162
Score = 150 bits (166), Expect = 4e-31
Identities = 162/213 (76%), Gaps = 1/213 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || || |||||||||||||| || || |||
Sbjct 38784 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCGGAC 38843
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGA-AGGAATCCCTCCGGACCAGCA 178042
|||||||| |||||||| |||||||||||||| || ||||||||||| ||||||||
Sbjct 38844 ACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGGAATCCCTCCCGACCAGCA 38903
Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102
|| | |||||||| || || ||||| || || || | || || ||| || ||| |
Sbjct 38904 GCGCTTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACGCTCAGCGACTACAACAT 38963
Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAG 178135
||| || || || ||||| ||||| || |||||
Sbjct 38964 CCAGAAGGAGTCTACACTCCATCTGGTGTTGAG 38996
>seq3
Length=57953
Score = 147 bits (162), Expect = 5e-30
Identities = 157/206 (76%), Gaps = 1/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || || |||||||||||||| || || |||
Sbjct 50565 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTCGGAC 50624
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || ||||| |||||||||||||| || || |||||||| ||||||||
Sbjct 50625 ACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAGCAG 50684
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||||| ||| || |||||||| ||||| | |||||| | ||||| ||| ||
Sbjct 50685 CGCTTGATCTTCG-CGGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAACATC 50743
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 50744 CAGAAGGAGTCGACCCTTCACCTCGT 50769
>seq144
Length=22955
Score = 140 bits (154), Expect = 8e-28
Identities = 139/180 (77%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 177956 GATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGA 178015
||||||||||||||| || || ||||| ||||| |||||||| |||||||||||
Sbjct 22 GATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGA 81
Query 178016 CAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075
||| || || ||||| || |||||||| || | |||||||| || || ||||| || ||
Sbjct 82 CAAGGAGGGCATCCCGCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTTGAGGA 141
Query 178076 TGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAG 178135
||| | || ||| ||||| ||| | ||||| ||||| || ||||| || ||||||||
Sbjct 142 CGGACGCACGCTTCAAGATTACAACATTCAAAAGGAATCGACCCTGCACCTCGTTTTGAG 201
>seq98
Length=54307
Score = 120 bits (132), Expect = 7e-22
Identities = 131/174 (75%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 177956 GATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGA 178015
||||||||||||||| || || ||||| ||||| |||||||| ||||| |||||
Sbjct 35535 GATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACGTCAAGGCCAAGATCCAGGA 35476
Query 178016 CAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075
||| || || ||||| || |||||||| || || ||||| ||||| || |||||||| ||
Sbjct 35475 CAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGA 35416
Query 178076 TGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
|| | |||||| | || || ||| | || || || || || || || || ||
Sbjct 35415 CGGCCGCACTCTTTCTGACTACAACATTCAGAAGGAGTCGACCCTTCACCTCGT 35362
>seq361
Length=17270
Score = 118 bits (130), Expect = 3e-21
Identities = 101/125 (81%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
||||| |||||||| || ||||||||||| |||||||| || ||||||||||| || ||
Sbjct 9278 AAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCGCGGGGAAG 9219
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
|||||||| ||||| | |||||| | ||||| ||| |||| ||||| || || || ||
Sbjct 9218 CAGCTCGAGGATGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACCCTCCAC 9159
Query 178125 CTTGT 178129
|| ||
Sbjct 9158 CTCGT 9154
Score = 113 bits (124), Expect = 1e-19
Identities = 100/125 (80%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
||||| |||||||| || ||||||||||| |||||||| || ||||||||||| || ||
Sbjct 8838 AAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCGCGGGGAAG 8779
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
|||||||| || || | |||||| | ||||| ||| |||| ||||| || || || ||
Sbjct 8778 CAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACCCTCCAC 8719
Query 178125 CTTGT 178129
|| ||
Sbjct 8718 CTCGT 8714
>seq94
Length=311871
Score = 116 bits (128), Expect = 9e-21
Identities = 130/174 (75%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 177956 GATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGA 178015
||||||||||||||| || || ||||| ||||| |||||||| |||||||||||
Sbjct 106171 GATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGA 106230
Query 178016 CAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075
||| || || || || || |||||||| || | ||||||||||| || ||||| || ||
Sbjct 106231 CAAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGA 106290
Query 178076 TGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
|| | || || ||| |||||| | || || || || || ||||| || ||
Sbjct 106291 CGGGCGCACGCTCAGCGACTATAACATTCAGAAGGAGTCGACGCTGCACCTGGT 106344
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203725570675810
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |