Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001456015.1_202015-12- 03] 365 sequences; 33,389,656 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq94 154 1e-32 seq314 131 2e-25 seq3 120 3e-22 seq98 109 5e-19 seq111 91.5 1e-13 seq361 89.7 5e-13 seq350 86.0 6e-12 seq188 82.4 7e-11 >seq94 Length=311871 Score = 154 bits (170), Expect = 1e-32 Identities = 146/184 (79%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | |||||| |||||||| |||||||||||||||||||||| Sbjct 106363 GCCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCT 106304 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| |||||| |||| || ||||||||||||||||| |||| |||||| ||||| | || Sbjct 106303 GAGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGG 106244 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || |||||||||| ||| | || || | ||| | | | |||||| |||||| | Sbjct 106243 AATGCCCTCCTTGTCC-TGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGA 106185 Query 41814 CCTC 41817 |||| Sbjct 106184 CCTC 106181 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | ||| || || || || ||| ||||| ||||| || || || Sbjct 106052 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 105993 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| ||||||||||| || ||||| || || ||||| ||||| | || Sbjct 105992 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGG 105933 Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778 | || |||||||||| ||| || Sbjct 105932 ATGCCCTCCTTGTCCTGGATCTT 105910 >seq314 Length=39162 Score = 131 bits (144), Expect = 2e-25 Identities = 170/231 (74%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| | | ||||||||||| || || ||||||||| ||||| |||||| Sbjct 39009 GCCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCT 38950 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGG 41753 ||| ||||| |||| || ||||||||||| ||||| |||| |||||| ||||| | || Sbjct 38949 GAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 38890 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 || | |||||||||| ||| | || || | ||| | | | ||||| ||||| Sbjct 38889 GATTCCCCTCCTTGTCC-TGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCG 38831 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| | || || || || || || || ||||| ||||| ||||||||| Sbjct 38830 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 38780 >seq3 Length=57953 Score = 120 bits (132), Expect = 3e-22 Identities = 167/230 (73%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | ||| || || || || ||||||||| ||||| || || || Sbjct 50788 GCCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGA 50729 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || | || ||||||||||| || ||||| |||| |||||| ||||| | || Sbjct 50728 AAGAGTACGACCATCCTCGAGCTGCTT-CCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 50670 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| | || || | || | | | ||||| |||||| | Sbjct 50669 GATGCCCTCCTTGTCC-TGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCAA 50611 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || || || || || || || ||||| ||||| ||||||||| Sbjct 50610 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 50561 >seq98 Length=54307 Score = 109 bits (120), Expect = 5e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||||||||| ||||| || || ||||| |||| ||||||||||||||||| || Sbjct 35379 CTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 35438 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778 || |||||||| ||||| | ||| | || |||||||||| ||| || Sbjct 35439 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTT 35486 >seq111 Length=69946 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 ||||||||||||| || || || ||||| || || ||| | |||| || ||||| Sbjct 54378 CGCCGCCGCGTAGGCGCAAGACGAGATGAAGGGTCGAATCCCTTTGAACCTTGTAGTCTT 54319 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 ||| ||||| ||| ||||||||||| || ||||| || || ||||| ||||| | | Sbjct 54318 CGAGCGTGCGGCTGTCCTCGAGCTGCTTCCCCGCGAACATGAGCCGCTGCTGGTCGGGAG 54259 Query 41754 GAACGCTCTCCTTGTCCATGATTTT 41778 | | || |||||||||| ||| || Sbjct 54258 GGATGCCCTCCTTGTCCTGGATCTT 54234 >seq361 Length=17270 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | ||| || || || || ||| ||||| ||||| || || || Sbjct 8695 GCCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGA 8754 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || |||| ||||||||||| || ||||| || || ||||| ||||| | || Sbjct 8755 AAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGG 8814 Query 41755 AACGCTCTCCTTGTCCATGATTTT 41778 | | |||||||||| ||| || Sbjct 8815 GATTCCCTCCTTGTCCTGGATCTT 8838 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | ||| || || || || ||| ||||| ||||| || || || Sbjct 9136 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 9195 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || ||||||||||| || ||||| || || ||||| ||||| | || Sbjct 9196 AGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGG 9255 Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778 | | |||||||||| ||| || Sbjct 9256 ATTCCCTCCTTGTCCTGGATCTT 9278 >seq350 Length=175002 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| ||||||| || | || | | ||| ||||| ||||| || Sbjct 103954 GCCGCCCCGCAGACGGAACACCATCTGGATGGTAGTGTTGCGCTGGATGTTGTAGTCCGA 103895 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| || || | || ||||||||||||| |||| ||||||||||| ||||| || || Sbjct 103894 GAGCGTACGTCCATCTTCGAGCTGCTTGCGCTCGAAGATCAGGCGCTGCTGGTCGGCCGG 103835 Query 41755 AACGCTCTCCTTGTC 41769 || || | |||||| Sbjct 103834 AATGCCCAGCTTGTC 103820 >seq188 Length=518690 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/137 (74%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCT-GAATGTTATAGTCGG 41693 |||||| ||||| || ||||| |||| || | | ||| | ||| ||| ||||| | Sbjct 167757 GCCGCCACGTAGGCGAGTGACCAGGTGCAAGGT-CGCGCCTCGTTGAAGGTTGTAGTCCG 167699 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 |||| ||||| |||| ||||||||||||| |||| ||||||||||| ||||| | | Sbjct 167698 AGAGTGTGCGACCGTCTTCGAGCTGCTTGCGCTCGAAGATCAGGCGCTGCTGGTCGGGCG 167639 Query 41754 GAACGCTCTCCTTGTCC 41770 | |||| ||||||| Sbjct 167638 GGACGCCAAGCTTGTCC 167622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462301890738000