Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542265.1_202016-01- 27] 137 sequences; 21,492,894 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq36 111 3e-19 seq127 104 5e-17 seq45 104 5e-17 seq25 104 5e-17 seq3 104 5e-17 seq2 87.8 4e-12 >seq36 Length=702765 Score = 111 bits (122), Expect = 3e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 230383 CAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGT 230442 |||||||| | ||||| || || | ||| |||| ||| | ||||| | || || Sbjct 444201 CAAATCATCGCCGAAGCCGTCGAGATCGAGCAGGAATTCCTGACGGACGCCTTGCCC-GT 444143 Query 230443 CGCCTT-ATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCG 230501 || ||| || ||||||||||| || ||| ||||||||||||| ||||| || ||||| Sbjct 444142 CGGCTTGATCGGCATGAACGCGACCCTCATGCGACAGTACATCGAGTTCGTCGCGGACCG 444083 Query 230502 CATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTAT 230561 | |||| || ||||| ||||||| ||||||| | ||||||| || | ||||| Sbjct 444082 ATTGCTTGTCGCGCTTGGGAACGAGAAGCTGTACAATGCCGAGAACCCGTTCGACTTTAT 444023 Query 230562 GGAGCTCATTTCGCTTCAAGGGAAGACCAA 230591 |||| | || ||| | | || |||||||| Sbjct 444022 GGAGATGATCTCGATGGAGGGCAAGACCAA 443993 >seq127 Length=988564 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 406204 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 406145 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 406144 CCCACATTGGGC 406133 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 452002 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 451943 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 451942 CCCACATTGGGC 451931 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 484925 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 484984 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 484985 CCCACATTGGGC 484996 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 490155 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 490214 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 490215 CCCACATTGGGC 490226 >seq45 Length=603287 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 465288 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 465229 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 465228 CCCACATTGGGC 465217 >seq25 Length=837659 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 496655 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 496714 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 496715 CCCACATTGGGC 496726 >seq3 Length=1053226 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 504148 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 504207 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 504208 CCCACATTGGGC 504219 >seq2 Length=1651214 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || || ||||||||| || || ||| | ||||||||||| || || ||||||||| | Sbjct 1108806 CTCATCGGCATGAACAGCGACCTCATGTGCCAGTACATCGAGTTTGTTGCCGACCGCTTG 1108747 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 |||| |||||||| ||||||| | ||| || ||||||| || | || |||||| Sbjct 1108746 CTTGTCGCACTTGGCAACGAGAAGATCTACCACAAGGAGAACCCGTTCGACTTCATGGAG 1108687 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAA 230591 | || ||| | | || |||||||| Sbjct 1108686 ATGATCTCGATGGAGGGCAAGACCAA 1108661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057822143188310