Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542265.1_202016-01- 27] 137 sequences; 21,492,894 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq83 172 6e-38 seq36 150 2e-31 seq2 132 5e-26 seq47 122 9e-23 seq127 102 8e-17 >seq83 Length=1320507 Score = 172 bits (190), Expect = 6e-38 Identities = 177/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| |||| ||||| | | Sbjct 967980 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCG 967921 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || |||| ||||| ||||| ||||| | ||||| Sbjct 967920 GACACCATCGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCCGACCA 967862 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||||||||| ||||| || |||| ||||| |||| ||||||||| Sbjct 967861 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACGCTCAGCGACTACAA 967802 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | || || ||||| |||||| | ||| | || ||| Sbjct 967801 CATCCAGAAGGAGTCTACACTCCATCTGGTGTTGAGGTTGCGCGGTGGC 967753 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | ||||| ||||| ||||| | |||||||| || | |||| || Sbjct 967177 TCAAGGCTAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGCTTGATCTTCG 967118 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 |||| || ||||| || |||| ||||| || || |||||||||||||| ||| | | Sbjct 967117 CGGGGAAGCAGCTTGAGGACGGACGCACGCTTTCAGATTACAACATCCAGAAAGAGTCTA 967058 Query 40886 CGCTGCATCTAGTG 40899 ||||||| || ||| Sbjct 967057 CGCTGCACCTGGTG 967044 >seq36 Length=702765 Score = 150 bits (166), Expect = 2e-31 Identities = 140/178 (79%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 116689 GGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCAT 116748 |||| | || |||||| | | |||||||| || ||| ||||||||||| || ||||| Sbjct 444926 GGACATCTCGAAGGACCTGTGGGACTGGGACCGACTGACGGACAACGAGCGACACTTCAT 444867 Query 116749 CAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGA 116808 | |||||| || ||||| |||||||| |||||||||||||||||||| |||| || Sbjct 444866 CTCGCACGTCCTTGCCTTCTTCGCCGCTTCGGACGGCATCGTCAACGAGAACTTGGTGGA 444807 Query 116809 GCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATC 116866 | | ||| | |||||||||| | ||||||||||| || |||||||| || |||||| Sbjct 444806 GAGGTTCTCGGCGGAGGTGCAGATTGCCGAGGCGCGCTGTTTCTACGGTTTCCAGATC 444749 Score = 109 bits (120), Expect = 6e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||||||||||||||| |||||| | | | |||| || | || || | Sbjct 444516 AGAAGGCCGAGTGGGCGCTGCGATGGATCTCGGACCCTCGCGCCGTGTTTGCGGAACGAC 444457 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| || ||||| || ||||||||| ||||||| || ||| |||||| | || || | Sbjct 444456 TGGTCGCTTTCGCCGCAGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCCTCGATCTTCT 444397 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTC 117139 |||| || || || ||| | ||||||||| |||| ||| Sbjct 444396 GGCTTAAAAAGCGTGGCTTGATGCCCGGCTTGACGTTC 444359 Score = 91.5 bits (100), Expect = 2e-13 Identities = 201/296 (68%), Gaps = 4/296 (1%) Strand=Plus/Minus Query 117143 AACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAG 117202 |||||||||||||| | ||||| || || || |||||||||||| | || ||| | Sbjct 444297 AACGAGCTCATCTCGCGCGACGAAGGCCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 444238 Query 117203 CATTTGGTGCAGCGACCGAGCGCGGCGC-GCGTCAGGGAGATCGTCACCGACGCGGTCGC 117261 || | | || ||||| ||||| | | ||||| | ||| || |||| || |||| Sbjct 444237 CACCTCGAGCGCCGACC-AGCGCCTCACCGCGTCGCCCAAATCATCGCCGAAGCCGTCGA 444179 Query 117262 CATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGA 117321 ||||||||| ||||| || || || |||| || | || | || | || |||| Sbjct 444178 GATCGAGCAGGAATTCCTGACGGACGCCTTGCCCGTCGGCTTGATCGGCATGAAC-GCGA 444120 Query 117322 AACG-ATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCG 117380 | ||| || ||||||||||||||||| ||| | |||| ||| ||| | || Sbjct 444119 CCCTCATGCGACAGTACATCGAGTTCGTCGCGGACCGATTGCTTGTCGCGCTTGGGAACG 444060 Query 117381 CCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTCCTTGGAG 117436 |||| ||||| | |||||| | ||||||||| | | ||||| ||||| Sbjct 444059 AGAAGCTGTACAATGCCGAGAACCCGTTCGACTTTATGGAGATGATCTCGATGGAG 444004 >seq2 Length=1651214 Score = 132 bits (146), Expect = 5e-26 Identities = 134/172 (78%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGG-CCGC 117027 || ||| || | ||||||||||||||||||| ||||||| | | | || | ||| Sbjct 1109236 CCTTGCATCCAGAAGAAGGCCGAGTGGGCGCTCACCTGGATCTCGGAC-GACCGCTCCGT 1109178 Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087 |||||||||||| || || || ||||| |||||||||||| ||||||| || ||| || Sbjct 1109177 CTTCGGCGAGCGTCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTT 1109118 Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTC 117139 ||| |||| || ||||||||||| |||||| | |||||||| || || ||| Sbjct 1109117 CGCGTCCATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACCTTC 1109066 Score = 93.3 bits (102), Expect = 4e-14 Identities = 199/295 (67%), Gaps = 2/295 (1%) Strand=Plus/Minus Query 117143 AACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAG 117202 |||||||||||||| | ||||| ||||| || |||||||||||| | || ||| | Sbjct 1108965 AACGAGCTCATCTCGCGCGACGAAGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 1108906 Query 117203 CATTTGGTGCAGCGACC-GAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGC 117261 || | | || || || | | || | || ||| | ||| || ||| ||||||| Sbjct 1108905 CACCTCGAGCGCCGCCCTCACCCCGACACG-GTCGAGCGCATCATCCGCGAGGCGGTCGA 1108847 Query 117262 CATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGA 117321 |||||||| |||||||| || |||||||| || || | || | || |||| Sbjct 1108846 GATCGAGCAAGAGTTCCTCACGGAGGCGCTGCCCGTCAAGCTCATCGGCATGAACAGCGA 1108787 Query 117322 AACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGC 117381 |||| || ||||||||||| || |||||| | |||| ||| || | | || Sbjct 1108786 CCTCATGTGCCAGTACATCGAGTTTGTTGCCGACCGCTTGCTTGTCGCACTTGGCAACGA 1108727 Query 117382 CAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTCCTTGGAG 117436 ||| |||| ||| | |||||| | ||||| ||| | | ||||| ||||| Sbjct 1108726 GAAGATCTACCACAAGGAGAACCCGTTCGACTTCATGGAGATGATCTCGATGGAG 1108672 Score = 89.7 bits (98), Expect = 5e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | ||||| ||||| ||||| | |||||||| || || |||| || Sbjct 1160732 TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCG 1160791 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 |||| || ||||| || |||| || || || || |||||||||||||| ||| | | Sbjct 1160792 CGGGGAAGCAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGA 1160851 Query 40886 CGCTGCATCTAGTGTTGCG 40904 | || || || ||| |||| Sbjct 1160852 CCCTCCACCTCGTGCTGCG 1160870 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | ||||| ||||| ||||| | |||||||| || || |||| || Sbjct 1160292 TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCG 1160351 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 |||| || ||||| || || | || || || || |||||||||||||| ||| | | Sbjct 1160352 CGGGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGA 1160411 Query 40886 CGCTGCATCTAGTGTTGCG 40904 | || || || ||| |||| Sbjct 1160412 CCCTCCACCTCGTGCTGCG 1160430 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/124 (75%), Gaps = 3/124 (2%) Strand=Plus/Minus Query 116689 GGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTT 116745 |||||| ||||||||| | | ||||||| | | || ||| ||||| | || Sbjct 1109719 GGACCTCTCCAAGGACCTCAACCACTGGGACAACAAGCTCAAGGACGACGAGAAGTACTT 1109660 Query 116746 CATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGT 116805 |||| |||||| || ||||| ||||||||| |||||||||||||||||||| |||| Sbjct 1109659 CATCTCGCACGTCCTCGCCTTCTTCGCCGCCTCGGACGGCATCGTCAACGAGAACTTGGT 1109600 Query 116806 CGAG 116809 |||| Sbjct 1109599 CGAG 1109596 >seq47 Length=435211 Score = 122 bits (134), Expect = 9e-23 Identities = 133/174 (76%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 40726 ATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGA 40784 |||||| |||| ||||| | | |||| | | |||| |||||| || || | || Sbjct 75817 ATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACG-TCAAGGCCAAGATCCAGGA 75875 Query 40785 CAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGA 40844 ||| |||||||||||| | |||||||| || ||||||| ||| ||||| ||||| || || Sbjct 75876 CAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGA 75935 Query 40845 CGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||||||| ||||||||||||||||||||| | || || || || || Sbjct 75936 CGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTTCACCTCGT 75989 >seq127 Length=988564 Score = 102 bits (112), Expect = 8e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||||||| | |||||||| || || |||| ||| ||||| ||||| || Sbjct 775645 GACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAG 775704 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||| ||||| || ||||||||||||||||||||| | || || || || || Sbjct 775705 GACGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTCCACCTCGT 775760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218317687120