Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542265.1_202016-01-
27] 137 sequences; 21,492,894 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq83 104 3e-17
seq127 82.4 9e-11
seq47 82.4 9e-11
>seq83
Length=1320507
Score = 104 bits (114), Expect = 3e-17
Identities = 155/215 (72%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030
|||||||| ||| | ||| |||||| || || ||||| || || || || ||||
Sbjct 967768 CAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCGTC 967827
Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090
|| |||||||| || ||||| || | ||||||||||||| || | | |||||||||
Sbjct 967828 CTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTC 967887
Query 43091 CATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148
| ||| | || | |||| ||| | | | ||||| || || || |||| ||||||
Sbjct 967888 C-TGAATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATG 967945
Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| ||||| || || ||||| || ||||| |||||
Sbjct 967946 GTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 967980
>seq127
Length=988564
Score = 82.4 bits (90), Expect = 9e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || | ||||| || |||| || |||||||| || |||||
Sbjct 775743 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 775684
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099
|| || ||||||||||||| || | || |||||||||| ||| ||
Sbjct 775683 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 775636
>seq47
Length=435211
Score = 82.4 bits (90), Expect = 9e-11
Identities = 114/157 (73%), Gaps = 2/157 (1%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || | || || || |||| || |||||||| || |||||
Sbjct 75972 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 75913
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
||||| ||||||||||| | || | || |||||||||| ||| || |||| |||
Sbjct 75912 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 75854
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
| | | |||||| ||| || || |||| |||||
Sbjct 75853 TGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGAT 75817
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571816620762360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |