Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542265.1_202016-01- 27] 137 sequences; 21,492,894 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq83 156 4e-33 seq36 123 2e-23 seq2 111 1e-19 seq127 95.1 1e-14 seq47 93.3 4e-14 >seq83 Length=1320507 Score = 156 bits (172), Expect = 4e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||||||||| | || ||| | ||| | || |||||||| || |||||||| ||||| Sbjct 967753 GCCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCT 967812 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| |||||| ||||||||||| ||| |||| || ||||||||||| ||||| Sbjct 967813 GAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 967872 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||| || ||||| || || ||||| | || | || || | ||||||| Sbjct 967873 GATTCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGAC 967932 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | ||| || ||||| || || || ||||| ||||||||| Sbjct 967933 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 967981 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| ||||| | || | || ||||| || || ||||||||||| Sbjct 967027 CCACCGCGAAGACGAAGCACCAGGTGCAGCGTAGACTCTTTCTGGATGTTGTAATCTGAA 967086 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| |||||||| || ||| |||| || ||||||||||| |||||| Sbjct 967087 AGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 967146 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162 || || || ||||| ||| || ||||| ||| Sbjct 967147 ATACCCTCCTTGTCCTGGATCTTAGCCTTGACCTG 967181 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||| | ||||||||| | || | ||||||||| || || || || ||||| Sbjct 967458 GCCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATATTATAATCCGA 967517 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || |||||| |||||||| || ||| |||| || ||||| ||||| ||||| Sbjct 967518 AAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGTTGGTCGGGAGG 967577 Query 131127 GATTCCTTCTTTGTC 131141 |||||| || || || Sbjct 967578 GATTCCCTCCTTATC 967592 >seq36 Length=702765 Score = 123 bits (136), Expect = 2e-23 Identities = 303/448 (68%), Gaps = 21/448 (5%) Strand=Plus/Plus Query 146049 AGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCAC 146105 ||||||| ||||||||||| || | |||| ||||| || || || ||| || | Sbjct 136407 AGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCTC 136466 Query 146106 CCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGG 146165 ||||||| |||| || || ||||||| | ||||| | |||||| || |||| | | Sbjct 136467 CCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCG 136526 Query 146166 CTACGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGC 146225 ||||||||| | || | ||| | ||| | | || | | || Sbjct 136527 AGTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGATGTTGTGGATCGAGAGGC 136586 Query 146226 CGAGACCGCC-GCCGTACTTGGATAT-AGCGGCGCA-GTCGCCGAGCGTCTCGTAGATGC 146282 ||| ||||| ||||| |||||| || |||| |||| ||| |||||| |||||||||| Sbjct 136587 CGATGCCGCCTGCCGT-CTTGGAGATGAGCG-CGCACGTCTT-GAGCGTGTCGTAGATGC 136643 Query 146283 CGTCAATGCTATCG--CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGG 146340 | || || ||| |||| || || || |||||||| | | ||||| ||| Sbjct 136644 CCTCGATCGAGTCGTCCTTC--ATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGG 136701 Query 146341 CGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCT----CATCA 146396 ||| || || ||| | |||||| |||||||||||| | | ||| ||| | Sbjct 136702 CGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAA----GTACCGCTCCGACATGA 136757 Query 146397 TCCGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCA 146456 ||||| ||||| ||| | |||||||||||| || ||||| | |||||||||| Sbjct 136758 GGTTGTACGTCTCGATCGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCA 136817 Query 146457 TGAGCATGTGTTGGGGCCGCTCCGCCAC 146484 |||||||||| || || ||||| ||||| Sbjct 136818 TGAGCATGTGCTGCGGTCGCTCGGCCAC 136845 Score = 104 bits (114), Expect = 2e-17 Identities = 353/548 (64%), Gaps = 4/548 (1%) Strand=Plus/Plus Query 144748 GGTGCGCAAATAGTACATGCCCGTTTTGAGTCCCGAGCGCCAAGTGTAGTCGTGTATCGA 144807 |||||| | |||||||||||||| ||||| || ||| |||| ||| ||||| Sbjct 134961 GGTGCGGAGGTAGTACATGCCCGTCTTGAGACCTTTCTTCCATCCGTAGAAGTGCATCGA 135020 Query 144808 CGTCATCAGAGCGTACGTGGGCTCCGCCACAAACAAATTTAGCGATTGGCTTTGATCAAT 144867 ||| | | | || || ||| || | | || ||||| || || || || Sbjct 135021 CGTGAGCTGCGCCATGGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGAT 135080 Query 144868 GAAAGCGTTGCGGTCGGCGGCCATCTCAATCATA--CGTTTGCATTTCATTTCCCAAGCG 144925 ||| ||| |||||||||||| | || || | | ||||| || ||||| || Sbjct 135081 GAACGCGCCGCGGTCGGCGGCGAGGTCGATGACGACCTTTTGCGAG--ATCTCCCACACG 135138 Query 144926 GTCTTGTACAAACGTTTAATGTGGTCCGGAATGCCGTCAATCGCCTGAATCGACCCCTTG 144985 |||||||| | || || | | ||| || |||||| | ||| ||||| || ||| Sbjct 135139 GTCTTGTAGATGCGCTTGAGCTCGTCGGGGATGCCGGGGACGTTCTGGATCGAGCCGTTG 135198 Query 144986 TGCGCAAATATGGCGTTCCGCATTTCGGACGTGTACAGTTTTAACTTGATCAAGTCGTCA 145045 ||||| | || | |||| ||| || | |||| | || | |||| Sbjct 135199 TGCGCGATGATCGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGG 135258 Query 145046 ATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTA 145105 | | | | ||||||||||| ||||||||||| | || || || || | ||| Sbjct 135259 AGGAGCCAGGGGTTGACGACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTTG 135318 Query 145106 GACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGC 145165 |||||| | || || || | |||||| ||| ||||| || ||||| ||||| ||| Sbjct 135319 GACGTGTACGGCTCGAACGCCTCGTTGAAGCCGAGGATCTGGCTGGTCGAGGCGGTAGGC 135378 Query 145166 ATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTA 145225 || ||| || | || ||||| | |||||||| | || | ||||| | | Sbjct 135379 ATCGGCGCGCACACGAGCGAGTTGCGGATGCCGTGCTGCGCAATCTTCTCCTTCAACTCG 135438 Query 145226 CCCCAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCG 145285 |||| ||||| || |||||| | |||| ||||| ||||||||||| | ||| | | Sbjct 135439 GCCCAGTCCCACAGGTCCGTCGGCGTGACGTTCCACAGATCGTACTGCAAGAGGCCGTGG 135498 Query 145286 CTGGCGGG 145293 || ||||| Sbjct 135499 CTCGCGGG 135506 >seq2 Length=1651214 Score = 111 bits (122), Expect = 1e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||| | ||||||||| | || | ||||||||| || || ||||||||||| Sbjct 1160883 GCCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGA 1160824 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || |||||| |||||||| || ||| |||| | |||||||||||| ||||| Sbjct 1160823 AAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGG 1160764 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162 |||||| || ||||| ||| || ||||| ||| Sbjct 1160763 GATTCCCTCCTTGTCCTGGATCTTGGCCTTGACCTG 1160728 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||||||||| | || | ||||||||| || || ||||||||||| Sbjct 1160442 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 1160383 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| |||||||| || ||| |||| | |||||||||||| |||||| Sbjct 1160382 AGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGG 1160323 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162 ||||| || ||||| ||| || ||||| ||| Sbjct 1160322 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACCTG 1160288 Score = 82.4 bits (90), Expect = 7e-11 Identities = 212/312 (68%), Gaps = 11/312 (4%) Strand=Plus/Minus Query 46261 AACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTA-TAA 46319 |||||||| || ||||||||||| || || || || |||||||| || ||| || | Sbjct 1108965 AACGAGCTCATCTCGCGCGACGAAGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 1108906 Query 46320 CAC-TCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGG 46378 ||| ||| | || || | || | |||||||| || | |||| || ||||||| Sbjct 1108905 CACCTCGAGCGC-CGCC---CTCAC-CCCGACACGGTCGAGCGCATCATCCGCGAGGCGG 1108851 Query 46379 TGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAAC- 46437 | | || ||| | ||||| | |||| || ||||||| || | ||||||||| Sbjct 1108850 TCGAGATCGAGCAAGAGTTCCTCACGGAGGCGCTGCCCGTCAAGCTCATCGGCATGAACA 1108791 Query 46438 GCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGT-GCAGCTTCA 46496 || ||| ||||| | |||||||||||||| || ||||| |||| || ||| ||| Sbjct 1108790 GCGACCTCA-TGTGCCAGTACATCGAGTTTGTTGCCGACCGCTTGCTTGTCGCA-CTTGG 1108733 Query 46497 CCAGCCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGA 46556 | | |||| | ||| | || || || || || ||| | | ||||| |||| Sbjct 1108732 CAACGAGAAGATCTACCACAAGGAGAACCCGTTCGACTTCATGGAGATGATCTCGATGGA 1108673 Query 46557 GGGCAAAACTAA 46568 |||||| || || Sbjct 1108672 GGGCAAGACCAA 1108661 >seq127 Length=988564 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||| | ||| || || | || | |||||||||||| || |||||||| || Sbjct 775779 GCCGCCGCGGAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 775720 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| |||||| ||||||||||| ||| |||| | ||||||||||| || || Sbjct 775719 AAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGG 775660 Query 131127 GATTCCTTCTTTGTC 131141 ||| || || ||||| Sbjct 775659 GATGCCCTCCTTGTC 775645 >seq47 Length=435211 Score = 93.3 bits (102), Expect = 4e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 |||||||||||| || |||||||| || | |||||| |||||| ||||||||||| Sbjct 75978 GGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 75919 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 ||| |||| | ||||||||||| || ||||| || || ||||| ||| || ||| Sbjct 75918 GGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 75859 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGT 131195 || | || | || || | ||||||| |||| ||| Sbjct 75858 GACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGT 75820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472011991678080