Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542265.1_202016-01-
27] 137 sequences; 21,492,894 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq127 114 3e-20
seq45 114 3e-20
seq25 114 3e-20
seq3 114 3e-20
seq48 100 6e-16
seq72 96.9 7e-15
seq36 95.1 2e-14
seq116 86.0 1e-11
>seq127
Length=988564
Score = 114 bits (126), Expect = 3e-20
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 406205 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 406146
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 406145 CCCCACATTGGGC 406133
Score = 114 bits (126), Expect = 3e-20
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 452003 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 451944
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 451943 CCCCACATTGGGC 451931
Score = 114 bits (126), Expect = 3e-20
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 484924 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 484983
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 484984 CCCCACATTGGGC 484996
Score = 114 bits (126), Expect = 3e-20
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 490154 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 490213
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 490214 CCCCACATTGGGC 490226
>seq45
Length=603287
Score = 114 bits (126), Expect = 3e-20
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 465289 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 465230
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 465229 CCCCACATTGGGC 465217
>seq25
Length=837659
Score = 114 bits (126), Expect = 3e-20
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 496654 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 496713
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 496714 CCCCACATTGGGC 496726
>seq3
Length=1053226
Score = 114 bits (126), Expect = 3e-20
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 504147 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 504206
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 504207 CCCCACATTGGGC 504219
>seq48
Length=279187
Score = 100 bits (110), Expect = 6e-16
Identities = 154/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCG- 279757
|| || || || ||||| ||||||||||| || || ||| | |||||||| || || ||
Sbjct 75001 GGCTCCCTCTCCGGTGGATGGAAGATGAAACTCGCTCTCGCCCGCGCCATCCT-CTTCGA 74943
Query 279758 TGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTG 279817
||||| |||| || || || ||||| |||||||| ||||| | |||||| |||||
Sbjct 74942 GGCCGACATCCTCCTCCTCGACGAGCCGACCAACCATTTGGACGTCCTCAACGTCGCCTG 74883
Query 279818 GCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTC 279877
||| | | |||||| | || |||| | || |||| ||||| ||||||||
Sbjct 74882 GCTCGAGAACTACCTCTGCTCGCTCAAGACCTGCACCTCGATCATCGTCTCGCACGACTC 74823
Query 279878 TGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCAC 279914
||| ||||| | ||| ||| | | |||| | |||
Sbjct 74822 TGGTTTCCTCAACAACGTCTGCACCGACATCCTCCAC 74786
Score = 95.1 bits (104), Expect = 2e-14
Identities = 128/176 (73%), Gaps = 3/176 (2%)
Strand=Plus/Minus
Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232
||| | || || || ||| | || ||||| ||||| |||| |||| | |||||||
Sbjct 74429 GTCCTCGGCCCGAACGGTTCCGGCAAGTCGACCCTCGTCAAGCTCCTCGTCGCCGAGACC 74370
Query 280233 CAGGCCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289
|| ||| |||| || | | |||||||| || ||| || || | ||||||||
Sbjct 74369 GAGCCCAACAAGGGCGGTGAGGTGTGGAAGCACCCGAACTTGGTCATCGGCTACGTCGCC 74310
Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACAT 280345
|||||||| |||||||||||||| ||||||| |||| |||||| ||| |||||
Sbjct 74309 CAGCACGCCTTCCACCACATCGACCACCACCTCGACAAGACTCCGCTCCAGTACAT 74254
Score = 87.8 bits (96), Expect = 4e-12
Identities = 100/132 (76%), Gaps = 2/132 (2%)
Strand=Plus/Minus
Query 280680 GGTCTGGACCCCGAGTTTACAACTCACT-CTCGCATTCGCGGTCTTTCTGGAGGCCAGAA 280738
||||| || |||||||| || || ||| | || || |||||||| || ||||| |||||
Sbjct 73904 GGTCTCGAGCCCGAGTTCACCACCCACAACACG-ATGCGCGGTCTCTCCGGAGGTCAGAA 73846
Query 280739 GGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGA 280798
|||||| | ||| ||| || || |||| | ||||||||| || | ||||||||
Sbjct 73845 GGTCAAGGTCGTCCTCGCCGCCGCCACCTGGCGCCGCCCTCACGTCGTCATCCTCGACGA 73786
Query 280799 GCCTACCAACTA 280810
||| ||||||||
Sbjct 73785 GCCCACCAACTA 73774
>seq72
Length=1317877
Score = 96.9 bits (106), Expect = 7e-15
Identities = 131/180 (73%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238
|| || || || ||||| ||||| ||| | ||||| | ||||||||||||| | ||
Sbjct 1146669 GGCCCGAACGGCGCGGGCAAGTCGACCTTGATCAAGCTGTTGACTGGCGAGACGCTCCCC 1146728
Query 280239 -ACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGC 280297
||| ||| ||| |||||| || ||| | || || || |||||||| ||||||||
Sbjct 1146729 GACTC-GGGACGCGTCGAGAAGCACCCGAACCTCCGAATCGCCTACGTCGCCCAGCACGC 1146787
Query 280298 TTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTA 280357
||||||||||||||| | ||||| || | | | || || ||||| |||||||||
Sbjct 1146788 CTTCCACCACATCGAGCAGCACCTCGAGAAGTCGGCTGTGCAGTACATCATGTGGCGCTA 1146847
>seq36
Length=702765
Score = 95.1 bits (104), Expect = 2e-14
Identities = 262/399 (66%), Gaps = 2/399 (1%)
Strand=Plus/Plus
Query 293032 GTTTTAAGACCCTTCTTCCATGCGTAGAACAGCATAGATGTCATAGACTTCAGTGTGGGA 293091
|| || ||||| ||||||||| ||||||| |||| || || | | || || ||
Sbjct 134983 GTCTTGAGACCTTTCTTCCATCCGTAGAAGTGCATCGACGTGAGCTGCGCCATGGTCGGC 135042
Query 293092 GTGGCCAGGAAAAGGTTCATGCTCTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCG 293151
| | ||| | ||| | ||||| ||| |||| || || || || || || |||
Sbjct 135043 GACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCGCCGCGGTCGGCGGCG 135102
Query 293152 AGGTCAATCACTGTCTTCATAGAGATCTCCCACGATGTCTTGTACACTGC-CTTGACATC 293210
||||| || || ||| |||||||||||| |||||||| | ||| ||||| ||
Sbjct 135103 AGGTCGATGACGACCTTTTGCGAGATCTCCCACACGGTCTTGTAGA-TGCGCTTGAGCTC 135161
Query 293211 AGGATGAATGCCAATAACCTTCTGGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCAT 293270
| ||||| || |||||||| || || || || || ||| |||||||||
Sbjct 135162 GTCGGGGATGCCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGTGTTCTTCAT 135221
Query 293271 TGTCTCGGACCAAGTCCCACGAGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGG 293330
| ||| ||| || || | | ||| ||||||| || | | |||||| || |
Sbjct 135222 CGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTTGACGACCTG 135281
Query 293331 GAACTCACCAGCGAGAGTGCGACGGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTC 293390
|||||| || ||||| ||| ||| |||| ||||| || ||| || ||| |||||
Sbjct 135282 GAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTTGGACGTGTACGGCTCGAACGCCTC 135341
Query 293391 AACAGACCCGCAAATCTGAGCAGTAGATGCGGTAGGCAT 293429
| ||| ||||| || || |||||||||||
Sbjct 135342 GTTGAAGCCGAGGATCTGGCTGGTCGAGGCGGTAGGCAT 135380
Score = 86.0 bits (94), Expect = 1e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 251577 CTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTT 251636
||||||||||| ||||| | |||||| |||||||| ||||| |||||||||| ||||
Sbjct 443998 CTTGCCCTCCATCGAGATCATCTCCATAAAGTCGAACGGGTTCTCGGCATTGTACAGCTT 444057
Query 251637 GGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAG 251696
| ||||| || || | | ||||| || || ||||| | ||||||| ||| ||
Sbjct 444058 CTCGTTCCCAAGCGCGACAAGCAATCGGTCCGCGACGAACTCGATGTACTGTCGCATGAG 444117
Query 251697 TTCAGAGTTCATGCCAATCA 251716
| ||||||||| ||||
Sbjct 444118 GGTCGCGTTCATGCCGATCA 444137
>seq116
Length=981576
Score = 86.0 bits (94), Expect = 1e-11
Identities = 144/206 (70%), Gaps = 2/206 (1%)
Strand=Plus/Minus
Query 217837 TGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGCC 217896
||||| ||||||||||| || |||||||| || |||| || | | ||||| |||
Sbjct 946942 TGCACGCTCATCCTGACCGAAGGAGACTCGGCCAAGGCGCTCGCCGTCTCGGGTCTCGCC 946883
Query 217897 GTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGC 217956
|| || || || || | || || |||||||||| || || ||||| |||||||| |||
Sbjct 946882 GTCGTCGGGCGCGACAACTACGGCGTCTTCCCCCTTCGCGGAAAGCTCCTCAACGTCCGC 946823
Query 217957 GATGCCTCGGTTTCAAGCATTGCT-GCAAATGCAGAGATTGCCGCCATCAAGCAAATCCT 218015
|| || | | |||| | || | || || ||||| || |||||||| ||| |
Sbjct 946822 GAGGCGACCG-GCAAAGCGCTCCTCGAGAACGCCGAGATCCAGGCGATCAAGCAGATCAT 946764
Query 218016 GGGTCTTCAGGTTGGAAAGACTTACA 218041
||| | ||| || ||||| ||||
Sbjct 946763 GGGCTTGCAGCAGGGCAAGACGTACA 946738
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027834995825217
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