Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542265.1_202016-01- 27] 137 sequences; 21,492,894 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq127 114 3e-20 seq45 114 3e-20 seq25 114 3e-20 seq3 114 3e-20 seq48 100 6e-16 seq72 96.9 7e-15 seq36 95.1 2e-14 seq116 86.0 1e-11 >seq127 Length=988564 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 406205 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 406146 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 406145 CCCCACATTGGGC 406133 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 452003 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 451944 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 451943 CCCCACATTGGGC 451931 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 484924 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 484983 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 484984 CCCCACATTGGGC 484996 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 490154 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 490213 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 490214 CCCCACATTGGGC 490226 >seq45 Length=603287 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 465289 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 465230 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 465229 CCCCACATTGGGC 465217 >seq25 Length=837659 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 496654 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 496713 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 496714 CCCCACATTGGGC 496726 >seq3 Length=1053226 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 504147 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 504206 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 504207 CCCCACATTGGGC 504219 >seq48 Length=279187 Score = 100 bits (110), Expect = 6e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCG- 279757 || || || || ||||| ||||||||||| || || ||| | |||||||| || || || Sbjct 75001 GGCTCCCTCTCCGGTGGATGGAAGATGAAACTCGCTCTCGCCCGCGCCATCCT-CTTCGA 74943 Query 279758 TGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTG 279817 ||||| |||| || || || ||||| |||||||| ||||| | |||||| ||||| Sbjct 74942 GGCCGACATCCTCCTCCTCGACGAGCCGACCAACCATTTGGACGTCCTCAACGTCGCCTG 74883 Query 279818 GCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTC 279877 ||| | | |||||| | || |||| | || |||| ||||| |||||||| Sbjct 74882 GCTCGAGAACTACCTCTGCTCGCTCAAGACCTGCACCTCGATCATCGTCTCGCACGACTC 74823 Query 279878 TGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCAC 279914 ||| ||||| | ||| ||| | | |||| | ||| Sbjct 74822 TGGTTTCCTCAACAACGTCTGCACCGACATCCTCCAC 74786 Score = 95.1 bits (104), Expect = 2e-14 Identities = 128/176 (73%), Gaps = 3/176 (2%) Strand=Plus/Minus Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232 ||| | || || || ||| | || ||||| ||||| |||| |||| | ||||||| Sbjct 74429 GTCCTCGGCCCGAACGGTTCCGGCAAGTCGACCCTCGTCAAGCTCCTCGTCGCCGAGACC 74370 Query 280233 CAGGCCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 || ||| |||| || | | |||||||| || ||| || || | |||||||| Sbjct 74369 GAGCCCAACAAGGGCGGTGAGGTGTGGAAGCACCCGAACTTGGTCATCGGCTACGTCGCC 74310 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACAT 280345 |||||||| |||||||||||||| ||||||| |||| |||||| ||| ||||| Sbjct 74309 CAGCACGCCTTCCACCACATCGACCACCACCTCGACAAGACTCCGCTCCAGTACAT 74254 Score = 87.8 bits (96), Expect = 4e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 280680 GGTCTGGACCCCGAGTTTACAACTCACT-CTCGCATTCGCGGTCTTTCTGGAGGCCAGAA 280738 ||||| || |||||||| || || ||| | || || |||||||| || ||||| ||||| Sbjct 73904 GGTCTCGAGCCCGAGTTCACCACCCACAACACG-ATGCGCGGTCTCTCCGGAGGTCAGAA 73846 Query 280739 GGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGA 280798 |||||| | ||| ||| || || |||| | ||||||||| || | |||||||| Sbjct 73845 GGTCAAGGTCGTCCTCGCCGCCGCCACCTGGCGCCGCCCTCACGTCGTCATCCTCGACGA 73786 Query 280799 GCCTACCAACTA 280810 ||| |||||||| Sbjct 73785 GCCCACCAACTA 73774 >seq72 Length=1317877 Score = 96.9 bits (106), Expect = 7e-15 Identities = 131/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 || || || || ||||| ||||| ||| | ||||| | ||||||||||||| | || Sbjct 1146669 GGCCCGAACGGCGCGGGCAAGTCGACCTTGATCAAGCTGTTGACTGGCGAGACGCTCCCC 1146728 Query 280239 -ACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGC 280297 ||| ||| ||| |||||| || ||| | || || || |||||||| |||||||| Sbjct 1146729 GACTC-GGGACGCGTCGAGAAGCACCCGAACCTCCGAATCGCCTACGTCGCCCAGCACGC 1146787 Query 280298 TTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTA 280357 ||||||||||||||| | ||||| || | | | || || ||||| ||||||||| Sbjct 1146788 CTTCCACCACATCGAGCAGCACCTCGAGAAGTCGGCTGTGCAGTACATCATGTGGCGCTA 1146847 >seq36 Length=702765 Score = 95.1 bits (104), Expect = 2e-14 Identities = 262/399 (66%), Gaps = 2/399 (1%) Strand=Plus/Plus Query 293032 GTTTTAAGACCCTTCTTCCATGCGTAGAACAGCATAGATGTCATAGACTTCAGTGTGGGA 293091 || || ||||| ||||||||| ||||||| |||| || || | | || || || Sbjct 134983 GTCTTGAGACCTTTCTTCCATCCGTAGAAGTGCATCGACGTGAGCTGCGCCATGGTCGGC 135042 Query 293092 GTGGCCAGGAAAAGGTTCATGCTCTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCG 293151 | | ||| | ||| | ||||| ||| |||| || || || || || || ||| Sbjct 135043 GACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCGCCGCGGTCGGCGGCG 135102 Query 293152 AGGTCAATCACTGTCTTCATAGAGATCTCCCACGATGTCTTGTACACTGC-CTTGACATC 293210 ||||| || || ||| |||||||||||| |||||||| | ||| ||||| || Sbjct 135103 AGGTCGATGACGACCTTTTGCGAGATCTCCCACACGGTCTTGTAGA-TGCGCTTGAGCTC 135161 Query 293211 AGGATGAATGCCAATAACCTTCTGGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCAT 293270 | ||||| || |||||||| || || || || || ||| ||||||||| Sbjct 135162 GTCGGGGATGCCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGTGTTCTTCAT 135221 Query 293271 TGTCTCGGACCAAGTCCCACGAGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGG 293330 | ||| ||| || || | | ||| ||||||| || | | |||||| || | Sbjct 135222 CGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTTGACGACCTG 135281 Query 293331 GAACTCACCAGCGAGAGTGCGACGGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTC 293390 |||||| || ||||| ||| ||| |||| ||||| || ||| || ||| ||||| Sbjct 135282 GAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTTGGACGTGTACGGCTCGAACGCCTC 135341 Query 293391 AACAGACCCGCAAATCTGAGCAGTAGATGCGGTAGGCAT 293429 | ||| ||||| || || ||||||||||| Sbjct 135342 GTTGAAGCCGAGGATCTGGCTGGTCGAGGCGGTAGGCAT 135380 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 251577 CTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTT 251636 ||||||||||| ||||| | |||||| |||||||| ||||| |||||||||| |||| Sbjct 443998 CTTGCCCTCCATCGAGATCATCTCCATAAAGTCGAACGGGTTCTCGGCATTGTACAGCTT 444057 Query 251637 GGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAG 251696 | ||||| || || | | ||||| || || ||||| | ||||||| ||| || Sbjct 444058 CTCGTTCCCAAGCGCGACAAGCAATCGGTCCGCGACGAACTCGATGTACTGTCGCATGAG 444117 Query 251697 TTCAGAGTTCATGCCAATCA 251716 | ||||||||| |||| Sbjct 444118 GGTCGCGTTCATGCCGATCA 444137 >seq116 Length=981576 Score = 86.0 bits (94), Expect = 1e-11 Identities = 144/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 217837 TGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGCC 217896 ||||| ||||||||||| || |||||||| || |||| || | | ||||| ||| Sbjct 946942 TGCACGCTCATCCTGACCGAAGGAGACTCGGCCAAGGCGCTCGCCGTCTCGGGTCTCGCC 946883 Query 217897 GTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGC 217956 || || || || || | || || |||||||||| || || ||||| |||||||| ||| Sbjct 946882 GTCGTCGGGCGCGACAACTACGGCGTCTTCCCCCTTCGCGGAAAGCTCCTCAACGTCCGC 946823 Query 217957 GATGCCTCGGTTTCAAGCATTGCT-GCAAATGCAGAGATTGCCGCCATCAAGCAAATCCT 218015 || || | | |||| | || | || || ||||| || |||||||| ||| | Sbjct 946822 GAGGCGACCG-GCAAAGCGCTCCTCGAGAACGCCGAGATCCAGGCGATCAAGCAGATCAT 946764 Query 218016 GGGTCTTCAGGTTGGAAAGACTTACA 218041 ||| | ||| || ||||| |||| Sbjct 946763 GGGCTTGCAGCAGGGCAAGACGTACA 946738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027834995825217