Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542265.1_202016-01- 27] 137 sequences; 21,492,894 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq83 161 2e-34 seq36 159 6e-34 seq48 141 2e-28 seq127 98.7 2e-15 seq45 98.7 2e-15 seq25 98.7 2e-15 seq3 98.7 2e-15 >seq83 Length=1320507 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| | | ||| |||| || || || ||||| || |||||||| || ||| | Sbjct 967754 CCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTG 967813 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || | | || |||||||| || Sbjct 967814 AGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 967873 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| ||||||||| ||||||||||| | || || || Sbjct 967874 ATTCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACC 967933 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || ||||||||||||||||| |||||||| Sbjct 967934 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 967980 Score = 132 bits (146), Expect = 9e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 |||||||| || |||| || | ||| || || |||||||| ||||| |||||||| || Sbjct 967459 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATATTATAATCCGAA 967518 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||||||||| ||||| || | | ||||||||||| || Sbjct 967519 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGTTGGTCGGGAGGG 967578 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || |||||||| ||||||||| ||||||||||| | || || || Sbjct 967579 ATTCCCTCCTTATCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACC 967638 Query 68415 TCCAAGGTGAT 68425 || | ||||| Sbjct 967639 TCGAGAGTGAT 967649 >seq36 Length=702765 Score = 159 bits (176), Expect = 6e-34 Identities = 286/418 (68%), Gaps = 0/418 (0%) Strand=Plus/Plus Query 30824 GTAATACATAAGCGTCTTGAGACCCTTCTTCCATGCATAGAACAGCATGGAAGACATTGA 30883 ||| ||||| |||||||||||| ||||||||| | ||||| |||| || | | Sbjct 134970 GTAGTACATGCCCGTCTTGAGACCTTTCTTCCATCCGTAGAAGTGCATCGACGTGAGCTG 135029 Query 30884 CTTCATAGAGGGCGCTGCAACGAAGAGGTTCATGCTCTGTGTCTGGTCAACAAACGGACC 30943 | ||| | |||| | | | || ||| | ||| | |||||| | |||| || Sbjct 135030 CGCCATGGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCGCC 135089 Query 30944 GCGGTCTGCTGCAAGGTCAATGACGGTCTTCATAGACAGCTCCCATGCGGTCTTGTAGAT 31003 |||||| || || ||||| |||||| ||| || | |||||| ||||||||||||| Sbjct 135090 GCGGTCGGCGGCGAGGTCGATGACGACCTTTTGCGAGATCTCCCACACGGTCTTGTAGAT 135149 Query 31004 TGCCTTGAGCTCAGGGTGGATGCCAATGACACGTTGGATGGACCCCCCGTTGGCAATAAT 31063 ||||||||| | ||||||| ||| ||||| || || || || || || Sbjct 135150 GCGCTTGAGCTCGTCGGGGATGCCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGAT 135209 Query 31064 CTGGTTCTTCATGGCCTCGGACCACGTGCCACGAGCGATGAGGTCGCGCACGAGGTAGTT 31123 | ||||||||| || ||| |||| ||| || ||| ||||||||| | ||| || Sbjct 135210 CGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGG 135269 Query 31124 GTTGACCACAGGGAACTCTCCAGCAAGGGTCCGGCGGCTGTACAGATTAGAAGTGATCGG 31183 |||||| || ||||||| || || ||| |||||| |||| | || || ||| ||| Sbjct 135270 GTTGACGACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTTGGACGTGTACGG 135329 Query 31184 CTCCATAGCCTCTACGGACCCGCAGATTTGCGCGGTGGATGCGGTGGGCATCAGCGCG 31241 ||| | ||||| | | ||| ||| || ||| || ||||| |||||| ||||| Sbjct 135330 CTCGAACGCCTCGTTGAAGCCGAGGATCTGGCTGGTCGAGGCGGTAGGCATCGGCGCG 135387 Score = 100 bits (110), Expect = 5e-16 Identities = 149/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 9981 TTGGACTTGCCCTCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAAC 10040 |||| ||||||||| | || || | |||||| ||||| || ||||||||||| || Sbjct 443993 TTGGTCTTGCCCTCCATCGAGATCATCTCCATAAAGTCGAACGGGTTCTCGGCATTGTAC 444052 Query 10041 TGCTTGGGGTAACCGAGTGCTGTGAA--AATGCGGTCAGCCACGAACTCGATGTACTGGC 10098 |||| || || || || | || ||| ||||| || ||||||||||||||||| | Sbjct 444053 AGCTTCTCGTTCCCAAGCGC-GACAAGCAAT-CGGTCCGCGACGAACTCGATGTACTGTC 444110 Query 10099 TCATCAGGTCCGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCT 10158 ||| ||| || ||||||||| |||| || | ||| | |||||| | ||| |||| Sbjct 444111 GCATGAGGGTCGCGTTCATGCCGATCAAGCCGACGGGCAAGGCGTCCGTCAGGAATTCCT 444170 Query 10159 TTTCGTTGGCGACCGCTTCCTCGACGAT 10186 ||| | |||| ||||| ||| ||| Sbjct 444171 GCTCGATCTCGACGGCTTCGGCGATGAT 444198 >seq48 Length=279187 Score = 141 bits (156), Expect = 2e-28 Identities = 374/559 (67%), Gaps = 28/559 (5%) Strand=Plus/Plus Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGC 225508 ||||| ||||||||||| || || ||||| || | | || | || ||||| Sbjct 74814 AGGAAACCAGAGTCGTGCGAGACGATGATCGAGGTGCAGGTCTTGAGCGAGCAGAGGTAG 74873 Query 225509 GTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGG 225568 | |||||| || |||||| |||||||| ||||| || || ||||| || || ||| Sbjct 74874 TTCTCGAGCCAGGCGACGTTGAGGACGTCCAAATGGTTGGTCGGCTCGTCGAGGAGGAGG 74933 Query 225569 ATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGAC 225628 ||||| || || | |||||||||||| | ||||| || ||||| ||||| || ||||| Sbjct 74934 ATGTCGGCCTCGAAGAGGATGGCGCGGGCGAGAGCGAGTTTCATCTTCCATCCACCGGAG 74993 Query 225629 AGGGAGCCGATTGAAACAGAGTGCTTA-GCT--TCGTCAAAGCCG---TACTCCAGGA-G 225681 ||||||||||| | | | | || | ||| | |||||| |||| |||| | Sbjct 74994 AGGGAGCCGATGG---CGGCCTCCTGACGCTCGCGGGTGAAGCCGACCGACTCGAGGACG 75050 Query 225682 CGTCTGGA-TAAT--GCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAG 225738 | | | | | | ||||| ||| | |||| | | ||| || || |||||| Sbjct 75051 CTGCGGCACTCGTCCTCGCTCTTGAG-GATGCGCTTG---TCCTTGAGGACGAACGAGAC 75106 Query 225739 GTAATCATATACGGTCATGTCCGAGACAGACG-CGTCAATGTCGTGGTCCACGTACACCG 225797 | ||| | | |||| | | || |||| | |||||| || ||||| | || Sbjct 75107 G--ATC-------GAGTTCTCCGTCTC-GTCGCCGTCGACGTCGTGCTCGACGTAGAACG 75156 Query 225798 TCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCA 225857 | |||| || | |||||||||||| | ||| || || | |||||||| | | Sbjct 75157 TGCGGACCTCGTCGGGGGAGGGGAAGCCCTCGACCTGTCCGTTGTCGATCGCACGCATAA 75216 Query 225858 GGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGT 225917 |||| |||||||| |||||| | || ||| ||||| | | || ||||||| Sbjct 75217 GGGTCGACTTGCCCGAACCGTTGCGTCCACAGAGACCGTAGCGGTGTCCACGCTTGAGAC 75276 Query 225918 TGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGC 225977 |||| | | ||| ||||||||||| | || || || || |||||| ||| | || Sbjct 75277 GGAGGGTAGCCGTGTTGAGGAGGATCTTTGCGCCGTAAGCGAGCGAGAACGTGCAGTTGC 75336 Query 225978 ACAGGTCCTCACCCTCCTC 225996 |||||||||| |||||||| Sbjct 75337 ACAGGTCCTCGCCCTCCTC 75355 Score = 93.3 bits (102), Expect = 8e-14 Identities = 123/170 (72%), Gaps = 3/170 (2%) Strand=Plus/Plus Query 224990 ATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCATGCTGGGCT 225049 ||||||||| || ||| |||| ||||||| || || |||||||| || |||||||| Sbjct 74254 ATGTACTGGAGCGGAGTCTTGTCGAGGTGGTGGTCGATGTGGTGGAAGGCGTGCTGGGCG 74313 Query 225050 ACGTACGCCATGCGCATGTTGGGATGCTTCCACA---CAGAGCCCCGAGTCGGTTGTGCC 225106 ||||| | ||| || ||| || |||||||||| || |||| | || | | | Sbjct 74314 ACGTAGCCGATGACCAAGTTCGGGTGCTTCCACACCTCACCGCCCTTGTTGGGCTCGGTC 74373 Query 225107 TCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCC 225156 ||| || ||||| ||||| ||| || | |||||| | ||| || ||||| Sbjct 74374 TCGGCGACGAGGAGCTTGACGAGGGTCGACTTGCCGGAACCGTTCGGGCC 74423 >seq127 Length=988564 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 406204 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 406145 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 406144 CCCACATTGGGC 406133 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 452002 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 451943 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 451942 CCCACATTGGGC 451931 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 484925 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 484984 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 484985 CCCACATTGGGC 484996 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 490155 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 490214 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 490215 CCCACATTGGGC 490226 >seq45 Length=603287 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 465288 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 465229 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 465228 CCCACATTGGGC 465217 >seq25 Length=837659 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 496655 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 496714 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 496715 CCCACATTGGGC 496726 >seq3 Length=1053226 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 504148 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 504207 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 504208 CCCACATTGGGC 504219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921620821721640