Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542265.1_202016-01- 27] 137 sequences; 21,492,894 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq36 271 1e-67 seq2 167 4e-36 >seq36 Length=702765 Score = 271 bits (300), Expect = 1e-67 Identities = 553/811 (68%), Gaps = 14/811 (2%) Strand=Plus/Plus Query 244792 GTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGAC 244851 |||| ||| |||||||||||||||||||| || ||||||| |||||| ||||||| Sbjct 136096 GTTGGCGGCATCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGAC 136155 Query 244852 GCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTG-CCCTCTGCCTCGTAGC 244910 | || |||||| | | || || || | || | | | ||||| |||||| Sbjct 136156 GGCGTACCAGAGCTTCTGGGCGGGGATGGTGC-GCTTGGCGCGACCCTCCTTCTCGTACT 136214 Query 244911 GGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCG 244970 | || ||| ||||||| ||| ||||||||| || ||||| | |||| Sbjct 136215 TTTCAAAGAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGACCGGGCGCCTCGGCCG 136274 Query 244971 GGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCC 245030 |||| | ||| ||| |||||| | || ||| | || |||||||||||||||||||| Sbjct 136275 GGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGATCC 136334 Query 245031 AGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCT 245090 | ||||| ||| | ||| | | | ||| ||| ||| |||||| | || | Sbjct 136335 AAAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGT 136394 Query 245091 CCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCC 245150 | | || || |||| |||| ||||||| ||||| | ||||| |||| ||||| || | Sbjct 136395 CGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGC 136454 Query 245151 GCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCA 245210 ||||||||||||||||||| || | | | |||| | | ||| || | || | Sbjct 136455 GCTTGTTGCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGA 136514 Query 245211 CTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGC 245270 |||||||| |||| |||||| ||||| |||||| | || | | | || |||| Sbjct 136515 TGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGATGTTGT 136574 Query 245271 TGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGT 245330 ||| || | ||| | ||||| || |||||||||||| ||||| |||||| |||| Sbjct 136575 GGATCGAGAGGCCGATGCCGCCTGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGT 136634 Query 245331 CTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGG 245390 | |||||||| || ||| |||||| ||| || ||||| || || ||||| | Sbjct 136635 CGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCG 136694 Query 245391 GCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGA 245450 | | || ||| | |||||| || || || ||||| |||||||| || ||| | Sbjct 136695 GGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACA 136754 Query 245451 GGAACCCGTACGTCTGGAGCAGAGC-GTCGATGTTGTCGCCGTGGATCTGCAGGGCGC-A 245508 || |||||||| || | | || ||| |||| ||||||||||| ||| | ||| | Sbjct 136755 TGAGGTTGTACGTCTCGATC-GCGCGGTCAATGTCGTCGCCGTGGA--TGCCGACCGCGA 136811 Query 245509 C-CTCATGAGGGTGTGCTGGGGCGTCTCG---ATGGGTCCCTCGGGTCCCTTGAGCATGT 245564 | | |||||| ||||||| || |||| | || ||| | | ||||| || Sbjct 136812 CGCGCATGAGCATGTGCTGCGGTCGCTCGGCCACCTTGCCGTCGAGGC---GGAGCAGGT 136868 Query 245565 AGGAGCGCTCGAGCGTCTTGAACCCAAAGTA 245595 | || ||||||||||||||||| || ||||| Sbjct 136869 ACGACCGCTCGAGCGTCTTGAAGCCGAAGTA 136899 Score = 174 bits (192), Expect = 3e-38 Identities = 616/945 (65%), Gaps = 78/945 (8%) Strand=Plus/Plus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| |||||| || || ||||||| || ||| | |||||||||||||| |||||| Sbjct 134929 ACGGTGAACTTGATGGCGCCGACGGCAGCGCGGGTGCGGAGGTAGTACATGCCCGTCTTG 134988 Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856 || || | ||| ||| || |||||| | ||| |||| | ||| || Sbjct 134989 AGACCTTTCTTCCATCCGTAGAAGTGCATCGACGTGAGCTGCGCCAT-----------GG 135037 Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC-CGCTC 243915 ||| | || | || || |||||| ||||| |||||||| ||| | |||| || || Sbjct 135038 TCGGCGACG-AGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACG-CGCCGCGGTC 135095 Query 243916 TGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTT 243975 ||||| | | ||||| | |||| || || ||||| || | |||||||||||| |||| Sbjct 135096 GGCGGCGAGGTCGATGACGACCTTTTGCGAGATCTCCCACACGGTCTTGTAGATGCGCTT 135155 Query 243976 GAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGT 244035 ||| | ||||||| || || |||||| | |||||| ||||| |||||| | | | Sbjct 135156 GAGCTCGTCGGGGATGCCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGTGTT 135215 Query 244036 GCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCC---TGTT 244092 ||| |||||||||||||| ||| || | ||| ||| ||| ||| Sbjct 135216 CTTCATCGCGTCGTTCCACAGGCC---GCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTT 135272 Query 244093 CACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTC 244152 || ||||| ||||| || | || |||||||| ||||| |||| || |||||| Sbjct 135273 GACGACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTTGGACGTGTACGGCTC 135332 Query 244153 GATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTC---GCAGTCGGCATGGGCG---A 244206 || ||| || ||| || ||||| || || || || || ||||| |||| | Sbjct 135333 GAACGCCTCGTTGAAGCCGAGGATCTG-GC--TGGTCGAGGCGGTAGGCATCGGCGCGCA 135389 Query 244207 CACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTC 244266 ||| ||| || ||| | | ||||||| |||| | ||| ||| ||| | || Sbjct 135390 CACGAGC-GA--GTTGCGGATGCCGTGC-------TGCGCAATCT--TCTCCTTCAACTC 135437 Query 244267 CCACATGCCCGAGAGGTCC-TCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCT 244325 | | || | |||||| ||| | ||| | ||||| || |||||| || || | Sbjct 135438 GGCCCAGTCCCACAGGTCCGTCG-GCGTGACGTTCCACAGATCGTACTGCAAGAGGCCGT 135496 Query 244326 TGCTGACGGG---GCTGC------CCTCGTAGGTCGGGTAGGGACCG---TCGC---GCT 244370 ||| |||| || || ||| ||| | |||||| ||| |||| | | Sbjct 135497 GGCTCGCGGGCGAGCCGCCGTTCTCCTTGTACGAGGGGTAGTAGCCGGGCTCGCCAGGGT 135556 Query 244371 GGGCCA--GCTTA-----CAGC--TCTCG---------TCGAGGGCGGCGTAGTAGATGG 244412 | || | || || ||| | ||| |||| ||||||| ||||| | Sbjct 135557 GCGCGATGGCGTAGTCGCGAGCCATGTCGCACGACGACTCGATCGCGGCGTGATAGATCG 135616 Query 244413 TCTCGAAGATCATCTTGTTCATGTCGCGGGCCT-TGCCGCAGGTGAAGGGGATGCCCATC 244471 ||||||||||| ||| | || ||| || | | || || ||| || | || | Sbjct 135617 TCTCGAAGATCTGGACGTTGAGGTGGCGCGCTTCAGGCG-AGTCGAACGGCAGGCGGAGG 135675 Query 244472 ATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTG 244531 ||||||| ||||||| || |||||||| ||||| ||||| || | ||| || |||| Sbjct 135676 GCCATGAAGGCGTCGGCGAGACCCTGCACACCGATACCGATCGGGCGGTGGCGGAAGTTG 135735 Query 244532 GAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGG 244591 |||| ||| || |||||||| ||||| ||||||| | ||| |||||| Sbjct 135736 CTGCGCTCGGCCTCCTTGACGGGGTAGTAGTTGACGTCGATGATGCGGTTCAGGTTGTAC 135795 Query 244592 GTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCG 244636 |||| | |||||||||| |||| || |||||||||||| Sbjct 135796 GTGACGACCTTGACGACGTCGTGCAGCTTCTTGAAGTCGTACTCG 135840 Score = 145 bits (160), Expect = 1e-29 Identities = 227/315 (72%), Gaps = 15/315 (5%) Strand=Plus/Minus Query 42806 GAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTC 42865 |||||| |||||| | ||||| || || || | ||||||||||||||||| ||||| Sbjct 444298 GAACGAGCTCATCTCGCGCGACGAAGGCCTCCACACCGACTTTGCCTGCCTCCTCTTCTC 444239 Query 42866 GAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCA--TCATCACGGAGGCC 42923 | |||||| || | || || | || ||| | ||| ||||| | || ||| Sbjct 444238 G---CACCTCGAGCGCCGACCAGCGCCTCACCGCGTC--GCCCAAATCATCGCCGAAGCC 444184 Query 42924 GTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAAC 42983 || ||||||||| |||| ||||| ||| | | ||||||| | || |||||||||| Sbjct 444183 GTCGAGATCGAGCAGGAATTCCTGACGGACGCCTTGCCCGTCGGCTTGATCGGCATGAA- 444125 Query 42984 CACGA-CCTCATGTGCAAGTACATCCAGTACGTCGCCGACC-ATCTCCTGTGCCAGATGG 43041 | ||| ||||||| | |||||||| ||| |||||| |||| || | ||| | ||| Sbjct 444124 CGCGACCCTCATGCGACAGTACATCGAGTTCGTCGCGGACCGATTGCTTGTCGCGCTTGG 444065 Query 43042 GTCTCAGCCGCCTCTACAACACGCCGTG--CCCCTTCGACTTTATGGAGAACATCTCGTT 43099 | || | || |||| | |||| | ||| |||||||||||||||| |||||| | Sbjct 444064 GAACGAGAAG-CTGTACA--ATGCCGAGAACCCGTTCGACTTTATGGAGATGATCTCGAT 444008 Query 43100 GGAGGGCAAGACCAA 43114 ||||||||||||||| Sbjct 444007 GGAGGGCAAGACCAA 443993 Score = 96.9 bits (106), Expect = 7e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 ||||||||| |||||||| || |||||||| |||||| | || ||| | Sbjct 444529 CCCTGCATCGCCAAGAAGGCCGAGTGGGCGCTGCGATGGATCTCGGACCCTCGCGCCGTG 444470 Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 || | || | ||||| || || |||| |||||||||||||||||||| ||| | ||| Sbjct 444469 TTTGCGGAACGACTGGTCGCTTTCGCCGCAGTCGAGGGCATCTTCTTCTCCGGCTCGTTC 444410 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTC 42805 ||||| ||||||||||| || || | | ||||||||| | || ||||| Sbjct 444409 GCCTCGATCTTCTGGCTTAAAAAGCGTGGCTTGATGCCCGGCTTGACGTTCTC 444357 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || |||||||||||||| || |||||||| ||||| |||||| ||| |||||| | Sbjct 444856 CTTGCCTTCTTCGCCGCTTCGGACGGCATCGTCAACGAGAACTTGGTGGAGAGGTTCTCG 444797 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGAT 42529 ||||||||| ||||||||||| |||||||| |||||||| Sbjct 444796 GCGGAGGTGCAGATTGCCGAGGCGCGCTGTTTCTACGGTTTCCAGAT 444750 >seq2 Length=1651214 Score = 167 bits (184), Expect = 4e-36 Identities = 227/311 (73%), Gaps = 7/311 (2%) Strand=Plus/Minus Query 42806 GAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTC 42865 |||||| |||||| | ||||| || || || | ||||||||||||||||| ||||| Sbjct 1108966 GAACGAGCTCATCTCGCGCGACGAAGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTC 1108907 Query 42866 GAGCCACCTCAGGCACAAGCCCTCGAAG-GAGCGGGTCCGGGCCATCATCACGGAGGCCG 42924 | |||||| || | |||||| || |||| | ||||||| ||||| | Sbjct 1108906 G---CACCTCGAGCGCC-GCCCTCACCCCGACACGGTCGAGCGCATCATCCGCGAGGCGG 1108851 Query 42925 TGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACC 42984 | ||||||||| | |||||||||||| || |||||||||| || ||||||||||| Sbjct 1108850 TCGAGATCGAGCAAGAGTTCCTCACGGAGGCGCTGCCCGTCAAGCTCATCGGCATGAACA 1108791 Query 42985 ACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACC-ATCTCCTGTGCCAGATGGGT 43043 ||||||||||||| |||||||| ||| || ||||||| | | ||| || ||| Sbjct 1108790 GCGACCTCATGTGCCAGTACATCGAGTTTGTTGCCGACCGCTTGCTTGTCGCACTTGGCA 1108731 Query 43044 CTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAG 43103 || | ||||| ||| | | ||| |||||||| ||||||| |||||| ||||| Sbjct 1108730 ACGAGAAG-ATCTACCACAAGGAGAACCCGTTCGACTTCATGGAGATGATCTCGATGGAG 1108672 Query 43104 GGCAAGACCAA 43114 ||||||||||| Sbjct 1108671 GGCAAGACCAA 1108661 Score = 152 bits (168), Expect = 1e-31 Identities = 141/176 (80%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGAC-GCAAC 42691 || |||||| |||||||||| || |||||||||| ||||||| | |||| || | Sbjct 1109236 CCTTGCATCCAGAAGAAGGCCGAGTGGGCGCTCACCTGGATCTCGGA---CGACCGCTCC 1109180 Query 42692 GT--TCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCC 42749 || |||||||| | || || || || ||||||||||||||||||||||||| ||| | Sbjct 1109179 GTCTTCGGCGAGCGTCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCG 1109120 Query 42750 TTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTC 42805 ||||| |||||||||||||||||| || | | ||||||||||||||||||||| Sbjct 1109119 TTCGCGTCCATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACCTTCTC 1109064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944337582819120