Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542265.1_202016-01- 27] 137 sequences; 21,492,894 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq83 122 2e-22 seq116 84.2 5e-11 >seq83 Length=1320507 Score = 122 bits (134), Expect = 2e-22 Identities = 167/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| | || | || ||||| | || || || ||||| || |||| Sbjct 967750 CATG-CCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGT 967808 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || ||||||||| ||||| || | || || || |||||||||| ||||| || Sbjct 967809 CGCTGAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGG 967868 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 |||||||| || || ||||| || || || || ||||| || || | || || | Sbjct 967869 GAGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACT 967928 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 967929 CGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 967980 Score = 100 bits (110), Expect = 7e-16 Identities = 141/197 (72%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || |||||||| | || ||||| || | || ||||| ||||||||||| | Sbjct 967455 CATG-CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATATTATAAT 967513 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || || || ||||| || | || || || |||||||||| |||||||| Sbjct 967514 CCGAAAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGTTGGTCGG 967573 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 |||||||| || |||||||| || || || || ||||| || || | ||| ||| | Sbjct 967574 GAGGGATTCCCTCCTTATCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACT 967633 Query 288422 CTACTTCGAGCGTGATC 288438 | || ||||| |||||| Sbjct 967634 CGACCTCGAGAGTGATC 967650 >seq116 Length=981576 Score = 84.2 bits (92), Expect = 5e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 325343 TCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTA 325402 ||||| || ||||| | | || |||||||||||| | ||| | | ||||||||| Sbjct 945752 TCCTTGCCGCCCTGGAGACGCGTACCGAACTGGCCGTTCGGGTCGAGCACGTTGATGTTG 945811 Query 325403 TTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCA 325462 ||||| |||||| | | ||| || ||| |||||||| || ||||| || || ||||| Sbjct 945812 TTGCTGCCGACAAAGTTCTGCGCGAGGCCGACGATGGTGCCCTGCAGCGAGGCGTCGCCG 945871 Query 325463 TGGTGATAGGC 325473 ||||| || || Sbjct 945872 TGGTGGTACGC 945882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179652329337886