Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542265.1_202016-01-
27] 137 sequences; 21,492,894 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq36 122 1e-22
seq2 113 7e-20
>seq36
Length=702765
Score = 122 bits (134), Expect = 1e-22
Identities = 332/499 (67%), Gaps = 16/499 (3%)
Strand=Plus/Plus
Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898
|| ||| || ||||||| |||||| ||||||| | | | | || |||||||||||
Sbjct 134922 CTGGTCGACGGTGAACTTGATGGCGCCGACGGCAGCGCGGGTGCGGAGGTAGTACATGCC 134981
Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958
||||| || || |||| ||| ||||| | |||||| || | || | || | | ||
Sbjct 134982 CGTCTTGAGACCTTTCTTCCATCCGTAGAAGTGCATCGACGTGAGCTGCGCCATGGTCGG 135041
Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGG 204017
| | ||| | ||| || ||||| ||||||||| || ||||| || || ||||
Sbjct 135042 CGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATG-AACGCGCCGCGGTCGGCGG 135100
Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTG- 204076
| | | ||| | | ||| ||||| ||||||||||| |||||| | | | | || | |
Sbjct 135101 CGAGGTCGATGACGACCTTTTGCGAGATCTCCCACACGGTCTTGTAGATG-CGCTTGAGC 135159
Query 204077 -TGTTGAGGCACAT-CTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATC 204133
|| | || || | |||| || |||||||||||||| || || | | ||
Sbjct 135160 TCGTCGGGG---ATGCCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGTGTTC 135216
Query 204134 CTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATG 204193
|| || | || ||||| ||| || || || || | || |||||||| |
Sbjct 135217 TTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTTGACG 135276
Query 204194 ATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAAC 204253
| ||| || || |||| || || | |||||| | | |||| ||| | || ||||||
Sbjct 135277 ACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGTAGATGTTGGACGTGTACGGCTCGAAC 135336
Query 204254 GCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGC---CAGGAGC 204310
||||||||| ||||| ||||| ||| ||| || ||||| || || || ||||
Sbjct 135337 GCCTCGTTGAAGCCGAGGATCTGGCTGGTCGAGGCGGTAGGCATCGGCGCGCACACGAGC 135396
Query 204311 AGGGAGTTGCGCACACCGT 204329
|||||||| | ||||
Sbjct 135397 ---GAGTTGCGGATGCCGT 135412
Score = 105 bits (116), Expect = 1e-17
Identities = 351/538 (65%), Gaps = 20/538 (4%)
Strand=Plus/Plus
Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224
|||||| || |||||| |||||| ||| | | |||| || || || | | | ||
Sbjct 136312 CTCCATGAAGAGGTCGGGGATCCAAAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTC 136371
Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTA 205283
| || ||||||| | ||| || || || | |||||||||||||||||||| |
Sbjct 136372 CTTGCCGTGGTTCTTGCGGAGGTCGAGG-AACTCGAAGATGTCGGCGTGCCACGGCTCGA 136430
Query 205284 ACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCG 205343
| | ||| | ||||| || | |||||| || |||||||| || ||| | | |
Sbjct 136431 GGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCTCCCTGGTCGACGTAGCGCGCCGTGT 136490
Query 205344 CGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGG 205403
|||| | || || ||||| || | | ||||| | | |||||||||| | ||||
Sbjct 136491 TGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGT 136550
Query 205404 CCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGA 205463
||| || || | | |||| ||| | ||| || ||||| | ||||| ||
Sbjct 136551 ACGAACCGGTCGCGCGGATGTTGTGGATCGAGAGGCCGATGCCGCCTGCCGTCTTGGAGA 136610
Query 205464 TCTGGGCGCAC-TCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC 205522
| | |||||| ||||| || ||| ||||||||| |||| || |||||| || ||
Sbjct 136611 TGAGCGCGCACGTCTTG-AGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTG 136669
Query 205523 ACCAGATAGCACGAAGCCAGCTTGGCAAAGTTG----GTGCCCGCGTGGAAGAGCGTGGG 205578
|| || ||||||| | |||| || | || ||||| |||| ||||||||| ||
Sbjct 136670 ACGAGGAAGCACGACGAGAGCT--GC--GGGTGCGGCGTGCCGGCGTTGAAGAGCGTCGG 136725
Query 205579 GCTGGCGTGGCTGAAGCGCTTCTCGCTCAAACA----CCTGTAGGTCTCCAGCACGCTCT 205634
||||| | ||| | ||||| ||| |||| ||||| | | ||| |
Sbjct 136726 CGACGCGTGCGTAAAG----TACCGCTCCGACATGAGGTTGTACGTCTCGATCGCGCGGT 136781
Query 205635 CCAGATCGAAGCCGTGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTC 205692
| | ||| |||||| || || | |||| | ||||| | ||| || |||| |||
Sbjct 136782 CAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAGCATGTGCTGCGGTCGCTC 136839
>seq2
Length=1651214
Score = 113 bits (124), Expect = 7e-20
Identities = 215/313 (69%), Gaps = 13/313 (4%)
Strand=Plus/Plus
Query 159662 TTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTCTTCACGTGATAG 159721
||||||||||||||||| || || |||||||| |||| ||||||| | ||| |||
Sbjct 1108661 TTGGTCTTGCCCTCCATCGAGATCATCTCCATGAAGTCGAACGGGTTCTCCTTGTGGTAG 1108720
Query 159722 CGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCGATGTAGCTACAC 159781
|||| || || || | ||||| | ||| || ||||| |||||||| |||
Sbjct 1108721 ATCTTCTCGTTGCCAAGTGCGACAAGCAAGCGGTCGGCAACAAACTCGATGTACTGGCAC 1108780
Query 159782 ATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTC 159841
|| | || | ||| || || | ||| | ||||| ||||| |||| || ||||| | |
Sbjct 1108781 ATGAGGTCGCTGTTCATGCCGATGAGCTTGACGGGCAGCGCCTCCGTGAGGAACTCTTGC 1108840
Query 159842 TCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGT-TCG----TACCCCGGCTTGC 159896
|| ||||||||||| ||| | || || ||| ||| ||| | |||| ||
Sbjct 1108841 TCGATCTCGACCGCCTCGCGGATGATGCGCTCGAC-CGTGTCGGGGTGAGGGCGGC--GC 1108897
Query 159897 CCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAG 159956
| | ||| | || |||||||| ||||||||| ||| || || ||||| || |
Sbjct 1108898 TC-----GAGGTGCGAGAAGAGGAGGCAGGCAAAGTCGGTGTGGAGACCTTCGTCGCGCG 1108952
Query 159957 AGATGAACTCGTT 159969
|||||| ||||||
Sbjct 1108953 AGATGAGCTCGTT 1108965
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795153838296720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |