Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542265.1_202016-01-
27] 137 sequences; 21,492,894 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq83 147 2e-30
seq127 123 3e-23
seq47 114 1e-20
seq105 102 9e-17
seq2 96.9 4e-15
seq44 86.0 7e-12
>seq83
Length=1320507
Score = 147 bits (162), Expect = 2e-30
Identities = 172/230 (75%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
|||| || | || | |||||||||||| | |||| |||||| ||||| |||||||||
Sbjct 967752 TGCCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGC 967811
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
|| ||||| |||| || ||||||||||| ||||| ||||||||||||||||||| |
Sbjct 967812 TGAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAG 967871
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543
| | | |||||||||| ||||| ||||| ||| | | | ||||| || ||
Sbjct 967872 GGATTCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAAGACTCG 967930
Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || | |||||||| ||||| || || || || || ||||| |||||
Sbjct 967931 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 967980
Score = 109 bits (120), Expect = 6e-19
Identities = 108/140 (77%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| | |||||| |||| ||| ||| || ||||| ||||| || || || ||||| |
Sbjct 967038 ACGAAGCACCAGGTGCAGCGTAGACTCTTTCTGGATGTTGTAATCTGAAAGCGTGCGTCC 967097
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
||| || |||||||| || ||||| ||||||||||||||||||| || | | ||||||
Sbjct 967098 GTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATACCCTCCTT 967157
Query 46498 GTCCATGATCTTCTTCTTGA 46517
|||| |||||| |||||
Sbjct 967158 GTCCTGGATCTTAGCCTTGA 967177
Score = 100 bits (110), Expect = 3e-16
Identities = 140/194 (72%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
||||||| | | ||||| ||| || || | || ||| || |||||||| || || |
Sbjct 967457 TGCCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATATTATAATCCG 967516
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| ||||| || |||| ||||||||||| || ||||| ||||||||||| ||||||| |
Sbjct 967517 AAAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGTTGGTCGGGAG 967576
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543
| | | |||||| ||| ||||| ||||| ||| | | | |||||| ||| ||
Sbjct 967577 GGATTCCCTCCTTATCCTGAATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGACGACTCG 967635
Query 46544 ACATCCACCGTGAT 46557
|| || | |||||
Sbjct 967636 ACCTCGAGAGTGAT 967649
>seq127
Length=988564
Score = 123 bits (136), Expect = 3e-23
Identities = 92/108 (85%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| || |||||||| |||| ||||||||||||||||||||
Sbjct 775743 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 775684
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT 46509
|||| |||||||||||||| || | || |||||||||| ||||||
Sbjct 775683 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 775636
>seq47
Length=435211
Score = 114 bits (126), Expect = 1e-20
Identities = 121/157 (77%), Gaps = 2/157 (1%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| || || ||||| |||| ||||||||||||||||||||
Sbjct 75972 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 75913
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||||||||| | || | || |||||||||| |||||| ||||| |||
Sbjct 75912 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 75854
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
| | | |||||| ||| || || || | |||||
Sbjct 75853 TGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGAT 75817
>seq105
Length=1000900
Score = 102 bits (112), Expect = 9e-17
Identities = 95/118 (81%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 46417 GTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTG 46476
||||||| || ||||| |||| ||||||||||| || ||||| |||||||||||||
Sbjct 596924 GTAGTCGCGCAGCGTGCGGGCGTCCTCGAGCTGCTTCCCAGCGAAGATCAAGCGCTGCTC 596983
Query 46477 GTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC 46533
||||| ||| | || |||||||||| |||||| |||||| ||||| ||||||||
Sbjct 596984 GTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGTCTTGA-CGTCGTAGACCGTGTC 597040
>seq2
Length=1651214
Score = 96.9 bits (106), Expect = 4e-15
Identities = 113/153 (74%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
||||||| | | ||||| ||| || || | || ||| || ||||| ||||| || |
Sbjct 1160884 TGCCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCG 1160825
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| ||||| || |||| ||||||||||| || ||||| || | ||||||||||||| |
Sbjct 1160824 AAAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAG 1160765
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517
| | | |||||||||| |||||| |||||
Sbjct 1160764 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTGA 1160732
Score = 87.8 bits (96), Expect = 2e-12
Identities = 110/151 (73%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||| | | ||||| ||| || || | || ||| || ||||| ||||| || ||
Sbjct 1160442 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 1160383
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
||||| || | || ||||||||||| || ||||| || | ||||||||||||| ||
Sbjct 1160382 AGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGG 1160323
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517
| | |||||||||| |||||| |||||
Sbjct 1160322 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGA 1160292
>seq44
Length=642075
Score = 86.0 bits (94), Expect = 7e-12
Identities = 95/124 (77%), Gaps = 2/124 (2%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTT-TTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
||||| ||||| || | | ||| ||| | |||||||| || || ||||| |||| ||
Sbjct 149099 ACCAGGTGCAAGGT-CGCGCCTCGTTGAAGGTTGTAGTCCGAGAGTGTGCGACCGTCTTC 149041
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
||||||||||| |||| |||| |||||||||||||| ||| |||| |||||||
Sbjct 149040 GAGCTGCTTGCGCTCGAAGATCAGGCGCTGCTGGTCGGGCGGGACGCCAAGCTTGTCCTG 148981
Query 46504 GATC 46507
||||
Sbjct 148980 GATC 148977
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565237432029240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |