Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542265.1_202016-01- 27] 137 sequences; 21,492,894 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq83 122 2e-22 seq2 111 3e-19 seq47 109 1e-18 seq127 91.5 3e-13 >seq83 Length=1320507 Score = 122 bits (134), Expect = 2e-22 Identities = 118/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || ||||| ||||| | |||||| | || || ||| Sbjct 967477 ACGAGGTGGAGGGTCGACTCTTTCTGGATATTATAATCCGAAAGAGTACGACCGTCCTCG 967536 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | || |||||||| ||||| || || || || || ||| Sbjct 967537 AGCTGCTTCCCCGCGAAGATCAAGCGCTGTTGGTCGGGAGGGATTCCCTCCTTATCCTGA 967596 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGA 195083 || || ||||||||| || |||||||| || Sbjct 967597 ATCTTGGCCTTGACGTTGTCGATGGTGTCGGA 967628 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 194926 CTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCA 194985 ||||| || || || || || ||||| || || || ||||| ||| || || | || Sbjct 967766 CTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCG 967825 Query 194986 TCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTG 195045 || || |||||||| || |||||||| | || || ||||| ||||| || || || ||| Sbjct 967826 TCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTG 967885 Query 195046 TCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACC 195105 || ||||| || ||||||||| || |||||||||||| || || || ||||| | Sbjct 967886 TCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATG 967945 Query 195106 GTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || || | || || ||||| | ||||| Sbjct 967946 GTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 967980 >seq2 Length=1651214 Score = 111 bits (122), Expect = 3e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || |||||||| | |||||| | ||||| ||| Sbjct 1160424 ACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCATCCTCG 1160365 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||||||||| || || ||||| ||||| || || || ||||| || Sbjct 1160364 AGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGG 1160305 Query 195052 ATTTTTTGCTTGAC 195065 || || |||||| Sbjct 1160304 ATCTTGGCCTTGAC 1160291 Score = 107 bits (118), Expect = 4e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || |||||||| | |||||| | || || ||| Sbjct 1160864 ACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCGTCCTCG 1160805 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||||||||| || || ||||| ||||| || || || ||||| || Sbjct 1160804 AGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGG 1160745 Query 195052 ATTTTTTGCTTGAC 195065 || || |||||| Sbjct 1160744 ATCTTGGCCTTGAC 1160731 >seq47 Length=435211 Score = 109 bits (120), Expect = 1e-18 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| || ||||| || || || ||||| || | || || | || || ||| Sbjct 75989 ACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCG 75930 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| || || ||||| || ||||| || Sbjct 75929 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 75870 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || ||||||||| || || |||||||| || || || ||||| Sbjct 75869 ATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGT 75820 >seq127 Length=988564 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| || | |||||| | || || ||| Sbjct 775760 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCG 775701 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| || || ||||| || ||||| || Sbjct 775700 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 775641 Query 195052 ATTTT 195056 || || Sbjct 775640 ATCTT 775636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109479652513079