Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542265.1_202016-01-
27] 137 sequences; 21,492,894 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq3 127 2e-24
>seq3
Length=1053226
Score = 127 bits (140), Expect = 2e-24
Identities = 148/197 (75%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 30188 ACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAA 30247
|||| || || ||||||| ||| ||| |||||| ||||| ||||| | | ||| | |
Sbjct 241820 ACCCATAGACTGGTCCCAAGTCACCCACTTCCCGGTGCTGCAAGCCTCGCGAGTCGAGGA 241879
Query 30248 AGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGT 30307
| |||| | |||||| ||||||||||||| || |||||||| | ||| | || ||||
Sbjct 241880 ACTCTCGGCTGCCGTTGCCGTCCCAGATCTTGACGCCCTTCTCCGCCAGCACCTTCGAGT 241939
Query 30308 TTGTGGA-CCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTC 30366
||| | ||||| ||||||||||| ||||||||| | || | | | | ||||| | |
Sbjct 241940 CCGTGCATCCCTC-GACGAACCACAACAGCTCCTCAATGATGCCGCGCGAGAAGACACGC 241998
Query 30367 TTGGTCGTGAGGAGGGG 30383
|||||||| ||||| ||
Sbjct 241999 TTGGTCGTCAGGAGCGG 242015
Score = 98.7 bits (108), Expect = 8e-16
Identities = 130/178 (73%), Gaps = 2/178 (1%)
Strand=Plus/Plus
Query 29784 CCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAG 29843
|| ||||||||| ||||| ||||| || ||||| || ||||||||||| ||||| || ||
Sbjct 241259 CCGCTCGAGCTGCGTCTTGAGCGGCTCGACGTGGTCGAGGTAGACGTGCGCGTCGCCGAG 241318
Query 29844 GGTGTGGACAAACTC-TCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGA 29902
| ||| ||||| | || || | ||| |||| |||| ||||||| ||| | ||
Sbjct 241319 CTGGAGGATGAACTCGTGTGGGATCGTG-TCGGAGACGAGAGCGATCATGTGCGTCAAGA 241377
Query 29903 GAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTA 29960
| | || ||||||||| ||||| || ||||| || | ||| | || | ||||||
Sbjct 241378 GCGCATACGAGGCGATGTTGAAGGGCACGCCGAGGCCGAGGTCGGCGGAGCGCTGGTA 241435
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408616917736301
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |