Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542265.1_202016-01- 27] 137 sequences; 21,492,894 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq36 196 9e-45 seq2 89.7 1e-12 >seq36 Length=702765 Score = 196 bits (216), Expect = 9e-45 Identities = 542/819 (66%), Gaps = 23/819 (3%) Strand=Plus/Plus Query 221819 TTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATC 221878 ||||| || |||||||||||||| ||||| ||| ||||| | ||| ||| | || | Sbjct 136097 TTGGCGGCATCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACG 136156 Query 221879 TTGTCCCAGAGTTCTCTGG-CGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATA 221937 || |||||| | ||||| || | || | |||| | |||||| ||| || || Sbjct 136157 GCGTACCAGAGCT-TCTGGGCGGGGATGGTGCGCTTGGCGCGACCCTC---CTTCTCGTA 136212 Query 221938 CCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCT-GG 221996 | | ||||| | |||| || ||||| |||||| || || || | ||| || Sbjct 136213 CTTTTCAAAGAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGACCGGG-CGCCTCGG 136271 Query 221997 CGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGA 222056 | || || | || ||||| ||| | | ||| | || |||||||||||| |||| Sbjct 136272 CCGGGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGA 136331 Query 222057 TCCACAGCGCCTGAAAGAG-ATCTCTGGTCCGCTG--CTCCTCCACGCCGTTGTTTTTCC 222113 |||| || || ||||| | || | ||| | ||||||| ||||| ||| || | Sbjct 136332 TCCAAAGGGC---AAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGC 136388 Query 222114 TCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGC 222173 || || | ||||| || ||||| |||||||||||||| || |||| ||| | |||| Sbjct 136389 GGAGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGC 136448 Query 222174 CGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGG 222233 | || ||||||||||| ||||| || || | | || |||| | | ||| || Sbjct 136449 CCGGGCGCTTGTTGCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCA 136508 Query 222234 TCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCA 222293 | || | | ||||| || ||||| ||||| ||||||| |||| || | | Sbjct 136509 TGGGGATGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGA 136568 Query 222294 GGTTACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGA 222353 ||| | || | |||||| || || || || ||||| | ||||| |||||| Sbjct 136569 TGTTGTGGATCGAGAGGCCGATGCCGCCTGCCGTCTTGGAGATGAGCGCGCACGTCTTGA 136628 Query 222354 GAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACA 222413 | ||||| ||||||||| || ||||| ||||| | | | || || || ||||| | Sbjct 136629 GCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGA 136688 Query 222414 TCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCC 222473 ||| | | | | | |||||| || ||||| || ||||| |||||||| | | Sbjct 136689 GCTGCGGGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCT 136748 Query 222474 TAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGG 222533 ||||| || | ||||||||| | | | | | |||| ||| ||||| || | | Sbjct 136749 CCGACATGAGGTTGTACGTCTCGATCGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCG 136808 Query 222534 CGCATCTCATGTACATGTACTGGGGCCTCTCCACAGGAC-CCTTGGAGCTGGA----GAG 222588 || | |||| ||||| ||| || | ||| || | ||||| | | || ||| Sbjct 136809 CGACGCGCATGAGCATGTGCTGCGGTCGCTC----GGCCACCTTGCCG-TCGAGGCGGAG 136863 Query 222589 CAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTT 222627 ||||||||| || || |||||||| || |||||||| Sbjct 136864 CAGGTACGACCGCTCGAGCGTCTTGAAGCCGAAGTAGTT 136902 >seq2 Length=1651214 Score = 89.7 bits (98), Expect = 1e-12 Identities = 107/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 25814 GCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTT- 25872 ||||| ||| |||||| |||||| | | |||||| | | | || |||| ||| | Sbjct 1109232 GCATCCAGAAGAAGGCCGAGTGGGCGCTCACCTGGATCT-CGGAC-GACCGCTCCGTCTT 1109175 Query 25873 -GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGC 25931 |||||||| || || || || || || || ||||||||||| ||| ||| ||||| || Sbjct 1109174 CGGCGAGCGTCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGC 1109115 Query 25932 GGCCATCTTCTGGCTCAAGCAG 25953 | ||||||||||||||||| || Sbjct 1109114 GTCCATCTTCTGGCTCAAGAAG 1109093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928843209353280