Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542265.1_202016-01- 27] 137 sequences; 21,492,894 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq36 131 2e-25 seq1 91.5 2e-13 >seq36 Length=702765 Score = 131 bits (144), Expect = 2e-25 Identities = 479/737 (65%), Gaps = 15/737 (2%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||||| ||||| ||||||||||||| || |||||||| | Sbjct 136833 CCGCAGCACATGCTCATGCGCGTCGCGGTCGGCATCCACGGCGACGACATTGACCGCGCG 136774 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | ||||| ||| || ||||| | |||| || | ||||| | || || ||||| Sbjct 136773 ATCGAGACGTACAACCTCATGTCGGAGCGGTA-CTTTACGCACGCGTCGCCGACGCTCTT 136715 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||| || || || || |||||| | || |||||||| || | | ||||| || Sbjct 136714 CAACGCCGGCACGCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAAGGACGA 136655 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 ||| ||| | || ||||| | || || | | ||| |||| ||||| ||| ||| || Sbjct 136654 CTCGATCGAGGGCATCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACGGCAGG 136595 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA-TTCG-GGGGACA 75508 || || || | ||||| | | | || | ||||| ||| || || Sbjct 136594 CGGCATCGGCCTCTCGATCCACAACATCCGCGCGA--CCGGTTCGTACATCGCCGGCACG 136537 Query 75509 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568 || || | || | || || || || ||||| ||||| | ||| ||| |||||||| Sbjct 136536 AACGGCTACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACGGCGCGCTAC 136477 Query 75569 GTAAATCAAGCGGGGC----GTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCA 75624 || | | || | ||| ||| ||| | |||| ||||| | || || ||||| Sbjct 136476 GTCGA-CCAGGGAGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGTGGCA 136418 Query 75625 TGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTG 75684 ||||| ||| | |||||||| || | || ||||| || | || |||| || Sbjct 136417 CGCCGACATCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGCGC 136358 Query 75685 TAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGG 75744 | || | || | |||| ||||| || ||||| |||||| |||| || ||| || Sbjct 136357 GCGCGACTTGTTCTTTGCCCTTTGGATCCCCGACCTCTTCATGGAGCGTGTCGAGCAGAA 136298 Query 75745 TGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGA 75804 || | ||| | || ||||| || | | |||| || |||||| ||| | || || Sbjct 136297 CGGCGACTGGCCCCTCTTCTGCCCGGCCGAGGCGCCCGGTCTCCACGAGGTCTACGGCGA 136238 Query 75805 GGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCG-ACTGTAC 75863 ||||| | | |||| |||||| || |||||||| | ||||| ||| || | | Sbjct 136237 CGAGTTCAAGGAGCTCTTTGAAAAGTACGAGAAGGAGGGTCGCGCCAA-GCGCACCATCC 136179 Query 75864 CAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATAT 75922 | ||| | || | | ||| | || | ||| | | ||| ||||| || | || | Sbjct 136178 CCGCC-CAGAAGCTCTGGTACGCCGTCCTCGAGGCCCAGGTCGAGACGGGCAACCCCTTC 136120 Query 75923 ATGCTTTACAAGGATGC 75939 ||||| ||||||||||| Sbjct 136119 ATGCTCTACAAGGATGC 136103 >seq1 Length=2201887 Score = 91.5 bits (100), Expect = 2e-13 Identities = 165/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 |||||||||||||| || |||||| | ||| | || || ||||| || ||||| ||| Sbjct 260923 GGTGCCAAGATCCCTCGCGGCGCCATCCTCTCCGGCCCTCCCGGTACCGGCAAGACGCTC 260864 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAA 175394 |||||| ||| | ||| || ||| | ||||| ||| || | || ||| | | | | Sbjct 260863 CTCGCCAAAGCGACCGCAGGCGAAGCCGGCGTCCCCTTCCTCTCCGT-CTCCGGCTCCGA 260805 Query 175395 CTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGC 175454 || || |||||||| || ||||| ||||||| | || ||||| || ||| | | Sbjct 260804 GTTCGTCGAGATGTTCGTCGGTGTCGGTGCCAGTCGTGTCCGCGACCT-TTTCACCCAGG 260746 Query 175455 CCGCGAA-AATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAG 175509 || ||| || || || || ||||||| || |||||||| ||| | || ||| Sbjct 260745 CCAAGAAGAACGCGCCGTGCATCATCTTCATCGACGAGATTGACGCGATCGGAAAG 260690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596568578374560