Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542265.1_202016-01-
27] 137 sequences; 21,492,894 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq25 244 1e-59
seq83 167 3e-36
seq47 147 3e-30
seq1 107 3e-18
>seq25
Length=837659
Score = 244 bits (270), Expect = 1e-59
Identities = 847/1310 (65%), Gaps = 21/1310 (2%)
Strand=Plus/Minus
Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538
|| ||||| ||||| ||||| || || || ||||||||| | || | ||||| |
Sbjct 727432 ACCGTCTTCGACGCCAAGCGCCTCATCGGACGCAAGTTTGCCGACGCCGAGGTCCAGTCC 727373
Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTC--CCGGTGTGGCTGATAAGCCTATGATTA 195596
|| || ||| ||||| | | | ||| | || | || ||| ||||| || ||
Sbjct 727372 GACATGAAGCACTGGCCGT-TCAAGGTCATCGACAAGTCGGGC----AAGCCCATCATCT 727318
Query 195597 ATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGT 195656
|| || | | || ||| |||| | || | ||||| || || ||||| |||||
Sbjct 727317 CGGTCGAGTACAAGGGCGAGCAGAAGGAGTTCACGCCCGAGGAGATCTCGTCGATGGTCC 727258
Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTG 195716
| | |||||||||||||| || || | | | | || || || | || || |
Sbjct 727257 TCCTCAAGATGAAGGAGACGGCCGAGGCCTACCTCGGCGGCACGGTCGCCAACGCCGTCG 727198
Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCT- 195775
| || || || || ||||||| || || || || ||||| || |||||||| | |||
Sbjct 727197 TCACCGTCCCCGCCTACTTCAACGACTCGCAGCGTCAGGCCACCAAGGACGC--CGGCTT 727140
Query 195776 -ATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTA 195834
|| |||| || ||| || | || ||||| || || || || || || || || ||
Sbjct 727139 GATCTCGGGCCTCAACGTCCTCCGCATCATCAACGAGCCCACCGCCGCCGCCATCGCGTA 727080
Query 195835 TGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGG 195894
|| || |||||||| || | || || || || | |||||||| | || || ||
Sbjct 727079 CGGCCTCGACAAGAAGTCCGAGGGCGAGAAGAACGTCCTCATCTTTGACTTGGGCGGCGG 727020
Query 195895 TACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGC 195954
||||| || ||||| || |||| || || | || || ||||| || ||||| |||||
Sbjct 727019 CACGTTCGACGTCTCGCTCCTCACGATCGAGGAGGGCATCTTCGAGGTCAAGGCGACTGC 726960
Query 195955 TGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTGTCTG 196013
|| || || || || || ||||| || || || || || || || |||||| |
Sbjct 726959 CGGAGACACCCACCTCGGCGGTGAGGACTTTGACAACCGCCTCGTCAACCACTTTGTC-G 726901
Query 196014 ATGAGTTCCGTCGAAAGAATAAGAAAGATATTTC-TGGAAATCCTAGGGCTCTTCGTCGG 196072
|||||| || ||||| ||||| || | || | ||| || | || || || ||
Sbjct 726900 CCGAGTTCAAGCGCAAGAACAAGAAGGACCTCTCGTCGAACGCC-CGCGCCCTCCGCCGT 726842
Query 196073 CTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTT 196132
|| | || || || || || ||||| || || ||||| || | || || || | |
Sbjct 726841 CTCCGCACCGCTTGCGAGCGCGCCAAGCGCACCCTCTCGTCGGCCGCCCAGACCACCATC 726782
Query 196133 GAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTT 196192
||||| || ||| | || || || || |||||||| || | || ||||| || || ||
Sbjct 726781 GAGATCGACTCGCTCTTCGAGGGCATCGACTTCTACACCTCGATCACCCGCGCCCGCTTC 726722
Query 196193 GAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGT 196252
|| ||| | | || | || | | ||||| || || || | || || ||
Sbjct 726721 GAGGAGCTCTGCCAGGACCTCTTCCGCTCGACGATGGAGCCCGTCGAGAAGGTCCTCCGC 726662
Query 196253 GACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGT 196312
||| | ||||| || ||| ||| | || |||||||| || || || || ||||||
Sbjct 726661 GACTCGAAGATTGACAAGCAGTCGGTCCACGAGATTGTCCTCGTCGGCGGCTCGACCCGT 726602
Query 196313 ATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACG 196372
|| ||| | || || | | || ||||||| || || ||||| ||
Sbjct 726601 ATCCCGCGTGTCCAGAAGCTCGTCTCCGACTTCTTCGGCGGCAAGGAGCCCAACAAGTCG 726542
Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGT 196432
||||||||||| || || || || || || || ||||| |||||||| || ||| | ||
Sbjct 726541 ATCAACCCGGACGAGGCCGTCGCGTACGGCGCCGCCGTCCAGGCTGCCATCCTCACCGG- 726483
Query 196433 GTTGACA---ATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTG 196489
|||| | || ||| || || || || || || || || || | ||
Sbjct 726482 --CGACACGTCCGAGAAGACCCAGGACCTCCTCCTCCTCGACGTCGCGCCTCTCTCGACC 726425
Query 196490 GGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCG 196549
||| | || || || || ||||| ||||| || | || | ||||| || | |||
Sbjct 726424 GGTATCGAGACCGCCGGCGGTGTCATGACCAAGCTCATCCCGCGCAACACGACCGTCCCG 726365
Query 196550 ACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAA 196609
|| |||||| | |||| || || || |||| || || || || || || ||
Sbjct 726364 ACGAAGAAGTCGGAGATCTTCTCGACCTACGCCGACAACCAGCCGGGCGTCTTGATCCAG 726305
Query 196610 GTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTG 196669
|| || ||||| ||||| | || | ||||| ||| | || || || | || || |
Sbjct 726304 GTCTACGAAGGTGAACGTGCACGCACCAAGGACAACAACCTCCTCGGCAAGTTTGAGCTC 726245
Query 196670 ACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGAC 196729
|||| || || | || ||| | || || || ||||| | || |||||| || |||
Sbjct 726244 TCGGGCATCCCCCCCGCGCCCCGCGGCGTCCCCCAGATCGAGGTCACCTTCGACATCGAC 726185
Query 196730 GCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATC 196779
|| || || || || |||||| | || ||||||| | | ||||| ||
Sbjct 726184 GCCAACGGCATCCTCAACGTCTCGGCCTCGGACAAGACCACCGGCAAGTC 726135
>seq83
Length=1320507
Score = 167 bits (184), Expect = 3e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| ||||| || || ||||| || || || || |||||||||||||| ||||| ||
Sbjct 967980 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCG 967921
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| ||||| ||| |||| ||||||||||| || ||||| || || || ||||| |||
Sbjct 967920 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCCGACCAG 967861
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041
|| || | || || || || || |||||||| || || || || ||| || ||||||
Sbjct 967860 CAGCGCTTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACGCTCAGCGACTACAAC 967801
Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088
| || ||||||||||| || || || || | ||| | || |||||
Sbjct 967800 ATCCAGAAGGAGTCTACACTCCATCTGGTGTTGAGGTTGCGCGGTGG 967754
Score = 129 bits (142), Expect = 8e-25
Identities = 134/176 (76%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 171898 ATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGAT 171957
||||| |||||||| |||||||| ||||| ||||| ||| |||| ||||||||||| |||
Sbjct 967649 ATCACTCTCGAGGTCGAGTCGTCCGACACCATCGACAACGTCAAGGCCAAGATTCAGGAT 967590
Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGAT 172017
||||| || || || ||||| || || || | || || || || || ||||| || ||
Sbjct 967589 AAGGAGGGAATCCCTCCCGACCAACAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGAC 967530
Query 172018 GGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073
|| ||||| || | ||||| || | || || ||||| || || ||||| || ||
Sbjct 967529 GGTCGTACTCTTTCGGATTATAATATCCAGAAAGAGTCGACCCTCCACCTCGTGCT 967474
>seq47
Length=435211
Score = 147 bits (162), Expect = 3e-30
Identities = 138/176 (78%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 171898 ATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGAT 171957
|||||||||||||| |||||||| ||||| ||||| ||| |||| |||||||| || ||
Sbjct 75817 ATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACGTCAAGGCCAAGATCCAGGAC 75876
Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGAT 172017
||||| ||||| || || || ||||| || || || || || || || ||||| || ||
Sbjct 75877 AAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGAC 75936
Query 172018 GGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073
|| || |||||| | || |||||| | || |||||||| || || ||||| || ||
Sbjct 75937 GGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTTCACCTCGTCCT 75992
>seq1
Length=2201887
Score = 107 bits (118), Expect = 3e-18
Identities = 260/384 (68%), Gaps = 11/384 (3%)
Strand=Plus/Minus
Query 198477 GCTAAGGATGAGCTCGAGGAGATTGTTGATTTTCTTAAAAACCCCGAAAAGTACTATGGA 198536
|| || || ||| || |||| | || | || || || ||||||||| | ||| | |
Sbjct 260986 GCGAAAGAGGAGATCATGGAGTTCGTCAAGTTCCTCAAGAACCCCGAACACTACGAGCGC 260927
Query 198537 AGTGGTGCCCGAATCCCACGTGGTGCTCTTCTCGCCGGTGCCCCGGGTACTGGTAAAACC 198596
|||||| ||||| || || || | ||| |||| | || ||||| || || ||
Sbjct 260926 CTCGGTGCCAAGATCCCTCGCGGCGCCATCCTCTCCGGCCCTCCCGGTACCGGCAAGACG 260867
Query 198597 CTTCTAGCTCGTGCTATCGCGGGTGAATCGAGTGTCCCCTTTCT-TCAGTGCTCCG-CGG 198654
|| || || || | ||| || ||| | | |||||||| || || || ||||| |
Sbjct 260866 CTCCTCGCCAAAGCGACCGCAGGCGAAGCCGGCGTCCCCTTCCTCTCCGT-CTCCGGCTC 260808
Query 198655 CGAGTTTCATCGAGATGTTCGTTGGTGTTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGC 198714
|||||| | ||||||||||||| ||||| ||||| | || ||||| || || ||| | |
Sbjct 260807 CGAGTT-CGTCGAGATGTTCGTCGGTGTCGGTGCCAGTCGTGTCCGCGACCT-TTTCACC 260750
Query 198715 AAGCACGTGAA-AATCAACCATGTATCATCTTCATTGATGAGATTGACGCTGTTGGTAAG 198773
|| | ||| || || || ||||||||||| || ||||||||||| | || |||
Sbjct 260749 CAGGCCAAGAAGAACGCGCCGTGCATCATCTTCATCGACGAGATTGACGCGATCGGAAAG 260690
Query 198774 AAGCGTG----GTGGAACTACTACACCTGGTAATGATGAGCGTGAGCAGACGATTAACCA 198829
|||| | | | | | | | || || || ||||| ||| |||| | |||||
Sbjct 260689 GCCCGTGGAAAGGGCGGCCAGTTCGGC-GGCAACGACGAGCGCGAGTCGACGCTCAACCA 260631
Query 198830 GCTTCTCACTGAGATGGATGGTTT 198853
||| ||| |||||||| || ||
Sbjct 260630 GCTCCTCGTCGAGATGGACGGCTT 260607
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657861273410640
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