Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542265.1_202016-01- 27] 137 sequences; 21,492,894 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq36 233 3e-55 seq2 163 4e-34 seq116 102 1e-15 >seq36 Length=702765 Score = 233 bits (258), Expect = 3e-55 Identities = 225/289 (78%), Gaps = 0/289 (0%) Strand=Plus/Minus Query 259894 CATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953 ||||||| ||| || || || ||| |||| |||||||| || ||||||||||||| Sbjct 136756 CATGTCGGAGCGGTACTTTACGCACGCGTCGCCGACGCTCTTCAACGCCGGCACGCCGCA 136697 Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013 ||||||| ||||||||||| || | ||||||| ||| ||||||||||||||||| Sbjct 136696 CCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAAGGACGACTCGATCGAGGGCATCTA 136637 Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGC 260073 |||||||||||| ||||||||||||||||||| |||| ||||||||||| | | Sbjct 136636 CGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACGGCAGGCGGCATCGGCCTCTCGAT 136577 Query 260074 ACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCT 260133 ||||| | ||||| | || | ||| | || ||||| |||||| | || |||||| | Sbjct 136576 CCACAACATCCGCGCGACCGGTTCGTACATCGCCGGCACGAACGGCTACTCGAACGGCAT 136517 Query 260134 TGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 | |||||||| ||||| | ||| ||||||||||||||||||||||| Sbjct 136516 CATCCCCATGCTCCGCGTGTACAACAACACGGCGCGCTACGTCGACCAG 136468 Score = 154 bits (170), Expect = 2e-31 Identities = 370/548 (68%), Gaps = 30/548 (5%) Strand=Plus/Minus Query 262879 TGGGACTGGGACGCACTGCGGGCGTCGGTTCGACAGCATGGCCTGCGCAACTCGTTGCTC 262938 |||||||||| || || || | | || ||||| ||| | ||||||||| ||| Sbjct 135449 TGGGACTGGGCCGAGTTGAAGGAGAAGATTGCGCAGCACGGCATCCGCAACTCG---CTC 135393 Query 262939 GTG---GCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTC 262995 ||| |||| ||||| || ||| |||| |||||||| ||| || |||||||||| Sbjct 135392 GTGTGCGCGCCGATGCCTACCGCCTCGACCAGCCAGATCCTCGGCTTCAACGAGGCGTTC 135333 Query 262996 GAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGGTC 263055 ||| |||| |||||||||||| |||||||| ||| | ||||| || || ||| Sbjct 135332 GAGCCGTACACGTCCAACATCTACACCCGCCGCGTCCTCGCCGGCGAGTTCCAGGTCGTC 135273 Query 263056 AACCGCCACCTGGTCAAGCG-CATGGTGGCGCGCGGCCTGTGGA-CGCC-CGACTTTCGC 263112 |||| | || || ||| | | || | ||||||||||||| || | ||| | Sbjct 135272 AACCCCTGGCTCCTCC-GCGACCTCGTCGACCGCGGCCTGTGGAACGACGCGA--TGAAG 135216 Query 263113 GACCGGCTCATTGCGGCACAG-GGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCC 263171 || | |||| ||| |||| |||||| | ||| | | || | | || Sbjct 135215 AACACGATCATCGCG-CACAACGGCTCGATCCAGAACGTCCCCGGCA------TCCCCGA 135163 Query 263172 CGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTGATAT 263231 ||| |||||| ||| |||||||||||||||| | | | ||| ||| || | Sbjct 135162 CGAGCTCAAGCGCATCTACAAGACCGTGTGGGAGATCTCGCAAAAGGTCGTCATCGACCT 135103 Query 263232 GGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTC----- 263286 || |||||||||| | | |||||||| |||||||||||| | ||||| Sbjct 135102 CGCCGCCGACCGCGGCGCGTTCATCGACCAGTCGCAGTCGCTCAACGTCCACCTCTCGTC 135043 Query 263287 GCCGACCCGACGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTC 263346 ||||||| | ||| || |||||||||||||| ||| | ||| || ||| Sbjct 135042 GCCGACC--ATGGCGCAGC---TCACGTCGATGCACTTCTACGGATGGAAGAAAGGTCTC 134988 Query 263347 AAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTC 263406 ||||| ||||||||||| || |||||||| | || | | |||||| | ||||||||| Sbjct 134987 AAGACGGGCATGTACTACCTCCGCACCCGCGCTGCCGTCGGCGCCATCAAGTTCACCGTC 134928 Query 263407 GATCAGGC 263414 || ||||| Sbjct 134927 GACCAGGC 134920 Score = 125 bits (138), Expect = 1e-22 Identities = 256/383 (67%), Gaps = 16/383 (4%) Strand=Plus/Minus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| ||||||| |||||| || ||| |||||| || ||||||||||||||| || Sbjct 136467 GGAGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATC 136408 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || | | || |||||| ||||||||||||| ||| |||| || |||||||| Sbjct 136407 TTCGAGTTCCTCGACCTCCGCAAGAACCACGGCA----AGGAGGAGGTCC--GCGCGCGC 136354 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGG--CC 261965 || | || | | ||| |||| |||||| || || | || || || | | | Sbjct 136353 GACTTGTTCTTTGCCCTTTGGATCCCCGACCTCTTCAT--GGAGCGTGTCGAGCAGAACG 136296 Query 261966 GCGACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGG 262025 |||||||| | ||||| |||||| ||||||||||||| || ||||| ||| |||| | Sbjct 136295 GCGACTGGCCCCTCTTCTGCCCGGCCGAGGCGCCCGGTCTCCACGAGGTCTACGGCGACG 136236 Query 262026 CCTTTGACGCCCTCTATG---AGNNNNNNNNNNNNNNNNNNNNNNCGCGGACCGTCGTGC 262082 || | | |||| || || ||| ||| || | Sbjct 136235 AGTTCAAGGAGCTCTTTGAAAAGTACGAGAAGGAGGGTCGCGCCAAGCGCACCATC---C 136179 Query 262083 CCGCACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACA 262142 |||| | || |||||| ||| | ||| |||||| ||||||| |||| |||| || Sbjct 136178 CCGCCCAGAAGCTCTGGTACGCCGTCCTCGAGGCCCAGGTCGAGACGGGCAACCCCTTCA 136119 Query 262143 TGGTCTACAAGGACGCCGTCAAC 262165 || |||||||||| |||| |||| Sbjct 136118 TGCTCTACAAGGATGCCGCCAAC 136096 Score = 118 bits (130), Expect = 2e-20 Identities = 199/278 (72%), Gaps = 15/278 (5%) Strand=Plus/Minus Query 1456460 GACTTTGCCTGTCTGCTCTACACGATGCTCGT----CAACAAGC-CGTCGACCGACGT-G 1456513 ||||||||||| || |||| | || |||| | || ||| | || |||| ||| | Sbjct 444261 GACTTTGCCTGCCTCCTCTTCTCGCACCTCGAGCGCCGACCAGCGCCTC-ACCG-CGTCG 444204 Query 1456514 CCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTG 1456573 ||||| ||||||| ||| ||||||||||||||| | || || | | || | || Sbjct 444203 CCCAA----ATCATCGCCGAAGCCGTCGAGATCGAGCAGGAATTCCTGACGGACGCCTTG 444148 Query 1456574 CCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCG 1456633 || || | | |||||||||||||| ||| |||||| | |||||||| | | || |||| Sbjct 444147 CCCGTCGGCTTGATCGGCATGAACGCGACC-CTCATGCGACAGTACATCG-AGTTCGTCG 444090 Query 1456634 CCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTC 1456693 | ||||| |||| | ||||| || | ||||||| ||| | | ||||||||| Sbjct 444089 CGGACCGATTGCTTGTCGCGCTTGGGAAC-GAGAAGCTGTACAATGCCGAGAACCCGTTC 444031 Query 1456694 CCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAA 1456731 | |||||| |||||||| | |||||||||||||| Sbjct 444030 GACTTTATGGAGATGATCTCGATGGAGGGCAAGACCAA 443993 >seq2 Length=1651214 Score = 163 bits (180), Expect = 4e-34 Identities = 213/287 (74%), Gaps = 7/287 (2%) Strand=Plus/Minus Query 1456447 AGGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGAC 1456506 |||| | ||| ||||||||||| || |||| | || |||| | ||| || | Sbjct 1108942 AGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCGCACCTCGAGCGCC-GCCCTCACC 1108884 Query 1456507 C-GACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCG 1456565 | ||| | | ||| |||||| |||||| |||||||||||| ||||||| ||| | Sbjct 1108883 CCGACACGGTCGAGCGCATCATCCGCGAGGCGGTCGAGATCGAGCAAGAGTTCCTCACGG 1108824 Query 1456566 AGTCGCTGCCGGTGGCGCTCATCGGCATGAAC-GCCACCGCTCATGTGCCAGTACATTGA 1456624 || ||||||| || |||||||||||||||| || || ||||||||||||||||| | Sbjct 1108823 AGGCGCTGCCCGTCAAGCTCATCGGCATGAACAGCGAC--CTCATGTGCCAGTACATCG- 1108767 Query 1456625 ATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCC 1456684 | ||||| ||||||||| |||| | || || ||| | |||||| ||||| | || Sbjct 1108766 AGTTTGTTGCCGACCGCTTGCTTGTCGCACTTGGCAAC-GAGAAGATCTACCACAAGGAG 1108708 Query 1456685 AACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAA 1456731 ||||||||| | |||||| |||||||| | |||||||||||||| Sbjct 1108707 AACCCGTTCGACTTCATGGAGATGATCTCGATGGAGGGCAAGACCAA 1108661 Score = 138 bits (152), Expect = 2e-26 Identities = 250/359 (70%), Gaps = 15/359 (4%) Strand=Plus/Minus Query 1601131 CGAGCGGAAGCCGCCGCGGTCGACAAAGTCCTGCTTGAGCACGAGCGAGTCCTCCTGGTT 1601190 ||||||||| ||||||||||| || ||| || | | || ||| ||||||||||| Sbjct 1589341 CGAGCGGAACAGGCCGCGGTCGATCGAGGACTGGTTCATGATGACCGAATCCTCCTGGTT 1589282 Query 1601191 GTAG---GGGTCGCTCATGATGGCCACGCGCGCATTCTGGCCCATCGGGAGGCGCGTGGC 1601247 |||| | || || || |||||| ||| || ||||| || |||| || || || Sbjct 1589281 GTAGCCGGAGTAGCACAGGATGGCGACGATGGCGTTCTGTCCGG-CGGGCAGCTCGCGGA 1589223 Query 1601248 GCCGATGACGTCCTCCATGGCG---GTCTGCACCAGCGGCACCTGCGGGTAGCACAGGGC 1601304 | || || |||||| | | ||| | | || ||| ||||||||| | ||| Sbjct 1589222 AGTG--GAGGTACTCCATCGAGCGCGTCGTCGCGAGGGGCTTTTGCGGGTAGTAGAGGAT 1589165 Query 1601305 GTGCGACACCGTGTCGATGG---CATGGTCGGCGTTGAGCGACACGACGGCCTTGCTCTG 1601361 || | || |||||| ||| | |||| | | |||| | || | | | || ||| Sbjct 1589164 GTTGGCCATCGTGTCCATGCGGACCTGGTAGTTGGTGAGGTAGACACC--CATAGC-CTG 1589108 Query 1601362 CTTGCCCATGGCCGTCTGGTAGATGTTGCGCGGCGCCTGGTTGTGGTTGGAAAACGGGAT 1601421 |||||||||||| | ||||||| |||||||||| | ||||||||||| || || ||||| Sbjct 1589107 CTTGCCCATGGCAGACTGGTAGGTGTTGCGCGGGGACTGGTTGTGGTCGGGGAAGGGGAT 1589048 Query 1601422 GATGGACGCGCAGGCGCCCAGCATGAGCAGCGGGTGGACCTCGACGTGCGTAAAGGGCT 1601480 ||||||||||||| ||| || || | ||||||| |||| |||||| ||| || Sbjct 1589047 GATGGACGCGCAGATGCCGAGGATCATGGAAGGGTGGATCTCGCAGTGCGTCCAGGTCT 1588989 Score = 105 bits (116), Expect = 1e-16 Identities = 120/156 (77%), Gaps = 5/156 (3%) Strand=Plus/Minus Query 1456122 GAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAG 1456181 ||| |||||||| |||||| | | |||||| | || || || | || | |||| Sbjct 1109225 GAAGAAGGCCGAGTGGGCGCTCACCTGGATCTCGGACGACCGCTCCGTC--TTCGGCGAG 1109168 Query 1456182 CGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCAT 1456239 || ||||||| || ||||| |||||||||||||| ||||| ||| ||| ||| |||| Sbjct 1109167 CGTCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTC-GCGTCCAT 1109109 Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||| |||||||||||||||||| | |||||||| || Sbjct 1109108 CTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACT 1109073 Score = 91.5 bits (100), Expect = 2e-12 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 332876 CGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAGGCC 332935 |||| || || || || || || | | |||||| | | | |||| |||||| ||| Sbjct 943312 CGCAAAATCGCGCACCGACTTTGAATCGGCTCGATAATCTTGTTCGACTGGTTGCAAGCC 943371 Query 332936 AGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGGGCC 332995 || || ||||||||||| ||| | | ||||| || |||||||| ||||| || Sbjct 943372 AGCGCGAACCGCGTCGTGTTGCTGTAGAGCTCCATCGTGCGGCGGAGGGCTTGTTGTGCG 943431 Query 332996 GCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGGCA 333053 | | ||| | ||||||| |||||||||||||||| ||||||||| || | |||| Sbjct 943432 CCAGTCGTCATCGAGTCGGCTTCGTCGAGGATGATGAGCTTGTGGCGGCCAAGAGGCA 943489 >seq116 Length=981576 Score = 102 bits (112), Expect = 1e-15 Identities = 192/281 (68%), Gaps = 1/281 (0%) Strand=Plus/Minus Query 1817497 CCGATGATGGGCTTGTTGGCCTGCGGCGACACGGTCTTGAGGGCCACGTTCATGGTGTGC 1817556 || |||| ||||||||||||||||||||| | | || | || ||| | ||| Sbjct 724846 CCCATGACGGGCTTGTTGGCCTGCGGCGAGATAATGTTTCGCGCGACGGCGGCGATGTTG 724787 Query 1817557 GTCACCTCGGCGCGCGCGTC-TCAGACTGGGGCACATGGAGGTTCATCTCGTCGCCGTCA 1817615 ||| ||| | || | || || ||||| || || || | ||||||||||||||||||| Sbjct 724786 ATCAGCTCCGACCGAGTCTCCTCTGACTGCGGGACGTGCAAGTTCATCTCGTCGCCGTCA 724727 Query 1817616 AAGTCGGCATTGTAGGTGCCCGTGACGGCCAGGTTGAACCGCATGGTACGGCCGGGCATG 1817675 |||||||| ||||| | ||||| | ||||||| || | ||| | |||||| Sbjct 724726 AAGTCGGCGTTGTACGGCGAGGTGACAGAGAGGTTGAGGCGGAAGGTCGAGTACGGCATG 724667 Query 1817676 GGCACCACCTTGTGCATGAGCATGGAGCCCATGTGGAGTGAGGGCTGCCGGTTCATCACC 1817735 || || |||| | ||| || | |||| | || ||||||||||| | || Sbjct 724666 AGCTTGACGCGGTGCGCCATCATCGACATCTTGTGCAACGACGGCTGCCGGTTGAACAGG 724607 Query 1817736 ACGGCGTCGCCGGCGCGCAGGTGACGCTCGACTGTCCACCC 1817776 ||| ||||||| | ||||| |||||||| |||| || Sbjct 724606 ACGATGTCGCCGTCCTTGAGGTGTCGCTCGACAATCCAGCC 724566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177797986098194