Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542265.1_202016-01-
27] 137 sequences; 21,492,894 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq83 127 2e-24
seq36 125 7e-24
seq47 91.5 1e-13
seq127 89.7 5e-13
>seq83
Length=1320507
Score = 127 bits (140), Expect = 2e-24
Identities = 156/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 134501 CAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTC 134560
|||||| || || || || || ||||| || ||||||||||||| | ||| || |||
Sbjct 967768 CAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCGTC 967827
Query 134561 GTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTC 134620
|| ||||| ||||| || || ||||| |||||||| ||||| || || || || || ||
Sbjct 967828 CTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTC 967887
Query 134621 TTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGT 134680
||||| || ||||| ||| | ||||| || || || || ||||| || |||||
Sbjct 967888 CTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGT 967947
Query 134681 TTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| ||||| | || || ||||| || |||||
Sbjct 967948 CTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 967980
Score = 102 bits (112), Expect = 8e-17
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
||||| | ||| |||| ||||||||| || || || || || || || || || || |
Sbjct 967459 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATATTATAATCCGAA 967518
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| || || ||| |||||||| || || || || ||||| ||||| || ||||| ||
Sbjct 967519 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGTTGGTCGGGAGGG 967578
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || || || || ||||| || ||||| ||| | ||||||||||| || ||
Sbjct 967579 ATTCCCTCCTTATCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACC 967638
Query 134667 TCGAGAGTAAT 134677
|||||||| ||
Sbjct 967639 TCGAGAGTGAT 967649
>seq36
Length=702765
Score = 125 bits (138), Expect = 7e-24
Identities = 288/425 (68%), Gaps = 9/425 (2%)
Strand=Plus/Minus
Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623
|| |||||||| ||||||| ||||| ||||| |||||||| ||||||||| ||| |
Sbjct 136830 CAGCACATGCTCATGCGCGTCGCGGTCGGCATCCACGGCGACGACATTGACCGCGCGATC 136771
Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683
|| |||||| | | ||||| | | ||||||||||| ||||| || | || |
Sbjct 136770 GAGACGTACAACCTCATGTCGGAGCGGTACTTTACGCACGCGTCGCCGACGCTCTTCAAC 136711
Query 7684 GCGGGCACAAACGC-GCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAG 7742
|| ||||| ||| || || | || ||||| || | | || ||| || |||
Sbjct 136710 GCCGGCAC-GCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAAGGACGACTC 136652
Query 7743 CATCGACGGCATTTACAACACGCTGCGCGA-TTGCGCCAATATTTCCAAATACGGC-GGC 7800
||||| ||||| ||| ||||||| | || ||||| || ||| || ||||| |||
Sbjct 136651 GATCGAGGGCATCTACGACACGCT-CAAGACGTGCGCGCTCATCTCC-AAGACGGCAGGC 136594
Query 7801 GGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAAC 7860
|| || || || | || || | ||||| | |||| ||||| ||| |||
Sbjct 136593 GGCATCGGCCTCTCGATCCACAACATCCGCGCGACCGGTTCGTACATCGCCGGCACGAAC 136534
Query 7861 GGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTA 7920
|| | | | ||| | |||||| | ||||||| ||| ||| ||| ||| | ||
Sbjct 136533 GGCTACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACGGCGCGCTACGTC 136474
Query 7921 GACCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCG 7977
|||||||| || |||||| ||||| |||||||| | ||||||||||||||
Sbjct 136473 GACCAGGGAGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGTGGCACGCC 136414
Query 7978 GACAT 7982
|||||
Sbjct 136413 GACAT 136409
>seq47
Length=435211
Score = 91.5 bits (100), Expect = 1e-13
Identities = 124/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564
|||||||| || || || ||||| || ||||||||||| | |||| | ||| |||
Sbjct 75989 ACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCG 75930
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
||||| ||||| || || || | |||||||| || || || ||||| || || || ||
Sbjct 75929 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 75870
Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677
|| || ||||| ||| | ||||| ||||| || || ||||| || ||
Sbjct 75869 ATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGAT 75817
>seq127
Length=988564
Score = 89.7 bits (98), Expect = 5e-13
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 134481 GCCTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAG 134540
||| | || || | ||| || | |||||||| || || || ||||| || |||||||||
Sbjct 775784 GCCATGCCGCCGCGGAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAG 775725
Query 134541 TCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCG 134600
|| || ||| | ||| |||||||| ||||| || || |||| |||||||| |||
Sbjct 775724 TCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCG 775665
Query 134601 GGCGGTATGCCTTCTTTTTCTTGAATTTT 134629
|| || ||||| || || || || || ||
Sbjct 775664 GGGGGGATGCCCTCCTTGTCCTGGATCTT 775636
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505397534505240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |