Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542265.1_202016-01- 27] 137 sequences; 21,492,894 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq36 183 4e-41 seq1 89.7 6e-13 seq3 87.8 2e-12 >seq36 Length=702765 Score = 183 bits (202), Expect = 4e-41 Identities = 489/736 (66%), Gaps = 11/736 (1%) Strand=Plus/Plus Query 118830 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 118889 ||||||||||| |||||| | || | |||||||| |||| || ||| | || | | Sbjct 136103 GCATCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACGGCGTAC 136162 Query 118890 CAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTA 118948 |||| | || | || || | ||| ||||| || ||||| | |||||||||| | Sbjct 136163 CAGAGCTTCTGG-GCGGGGATGGTGCGCTTGGCGCGACCCTCCTTCTCGTACTTTTCAAA 136221 Query 118949 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 119008 ||| | | ||||| || || | |||| ||| || || |||| | |||||||| Sbjct 136222 GAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGACCGGGCGCCTCGGCCGGGCAGAA 136281 Query 119009 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 119068 ||| | ||| | || || ||| || |||| |||||||||||| |||||||| || || Sbjct 136282 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGATCCAAAGGGC 136341 Query 119069 CGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 119128 |||| | || || ||| | || || | || || || || | || | || Sbjct 136342 AAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 136401 Query 119129 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACG 119185 || | ||| || ||||||||||| || ||||| | |||| | ||| || Sbjct 136402 CTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTT 136461 Query 119186 ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACC 119245 || |||||| || || | ||| ||| ||| | || || ||||| || ||||| || Sbjct 136462 GCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCC 136521 Query 119246 ATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCGTGGATG 119303 | || | ||| || || || ||| ||||| || | || | || | |||||| Sbjct 136522 GTTCGAGTAGCCGTTCGTGCCGGCGATGTACGA-AC-CGGTCGCGCGGATGTTGTGGATC 136579 Query 119304 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAG 119363 | || || || |||||| ||| ||||| |||||||| | |||| || ||||| Sbjct 136580 GAGAGGCCGATGCCGCCTGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAG 136639 Query 119364 ATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG 119423 || || ||||||||||| |||| | | || ||||||||| ||| | || || Sbjct 136640 ATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGC 136699 Query 119424 GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACC-TTGGGACATCTT 119482 || || || ||||||||||| || || | |||||| | || |||| | ||||| Sbjct 136700 GGCGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGT-AAAGTACCGCTCCGACATGAG 136758 Query 119483 GTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCAT 119542 || ||| ||||| | || | |||||| || ||||| || |||| || ||| ||||| Sbjct 136759 GTTGTACGTCTCGATCGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCAT 136818 Query 119543 AAACATGTATTGGGGT 119558 | ||||| || ||| Sbjct 136819 GAGCATGTGCTGCGGT 136834 >seq1 Length=2201887 Score = 89.7 bits (98), Expect = 6e-13 Identities = 187/276 (68%), Gaps = 2/276 (1%) Strand=Plus/Plus Query 14233 CTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATT-TTCACGGGCAA 14291 ||| |||| |||||||| || |||||||| | ||| || || || ||| || | Sbjct 260690 CTTTCCGATCGCGTCAATCTCGTCGATGAAGATGATGCACGGCGCGTTCTTCTTGGCCTG 260749 Query 14292 CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG 14351 | ||| | || || || | ||||||||||||| || |||||||| || || | || Sbjct 260750 GGTGAAA-AGGTCGCGGACACGACTGGCACCGACACCGACGAACATCTCGACGAACTCGG 260808 Query 14352 CGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGG 14411 | |||| || |||||||||| | ||| || ||| | ||| ||||||||| | Sbjct 260809 AGCCGGAGACGGAGAGGAAGGGGACGCCGGCTTCGCCTGCGGTCGCTTTGGCGAGGAGCG 260868 Query 14412 TCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCACTGC 14471 |||| || || || || || | ||| | ||| || || |||||| ||||||| || Sbjct 260869 TCTTGCCGGTACCGGGAGGGCCGGAGAGGATGGCGCCGCGAGGGATCTTGGCACCGAGGC 260928 Query 14472 CAAAGTAGCGTTCAGGTTGTTTAAGGAAGTCCACGA 14507 |||| |||| || | || ||||| | |||| Sbjct 260929 GCTCGTAGTGTTCGGGGTTCTTGAGGAACTTGACGA 260964 >seq3 Length=1053226 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 12072 GGGAACCTCAACGCCGAGAGGGACTGGGGACATGCCAAGGACTATGTTGAAGCCATGTGG 12131 || |||||| |||| || | ||||||||||| || ||||| || || | ||||||| Sbjct 623665 GGTAACCTCGACGCGAAGCGCGACTGGGGACACGCTCGTGACTACGTCGAGGGCATGTGG 623724 Query 12132 CTCGTACTTCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCC 12191 | | | || || || || || | ||||| | |||| ||||||| || ||||| ||| || Sbjct 623725 CGCATGCTCCAGCAGGACCAGCCCGACGACTTTGTCCTCGCGACTGGCGAGACCCACCCC 623784 Query 12192 GTCAGGGAGTTCGTTGAG 12209 ||| | ||||| || ||| Sbjct 623785 GTCCGCGAGTTTGTCGAG 623802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434140929720