Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542265.1_202016-01- 27] 137 sequences; 21,492,894 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq36 452 4e-122 >seq36 Length=702765 Score = 452 bits (500), Expect = 4e-122 Identities = 544/735 (74%), Gaps = 6/735 (1%) Strand=Plus/Plus Query 79170 GGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTC 79229 ||| ||||||||| |||| | || | || ||||| ||||| || ||| ||| ||| Sbjct 136102 GGCATCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACGGCGTA 136161 Query 79230 CCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCGGTA 79289 ||||| | | |||| ||| |||| ||||||| ||||| | | Sbjct 136162 CCAGAGCTTCTGGGCGGGGATGGTGCGCTTGGCGCGACCCTCCTTCTCGTACTTTTCAAA 136221 Query 79290 CAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACAT 79349 | ||| ||||| | || || ||||| ||| | || || || |||| |||||| | Sbjct 136222 GAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGACCGGGCGCCTCGGCCGGGCAGAA 136281 Query 79350 CAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGC 79409 ||| ||||||| ||| || ||| || ||||||||||||||| |||||||| ||||| Sbjct 136282 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGATCCAAAGGGC 136341 Query 79410 CGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAA 79469 ||| | |||||| || | |||||| | ||| |||||| || || ||||| || Sbjct 136342 AAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 136401 Query 79470 GTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCC 79529 || | ||||||||||||||||||||| || ||||||||||||| ||| ||||||| Sbjct 136402 CTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTT 136461 Query 79530 GCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCC 79589 ||| ||||||| |||||| || |||||||||||| | || ||||||||||| | |||||| Sbjct 136462 GCCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCC 136521 Query 79590 GTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTG 79649 || | | ||||||||| ||| ||| | |||| |||| || ||||| | | | | Sbjct 136522 GTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGATGTT-GTGGATCG 136580 Query 79650 -GATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGA 79708 || |||||||| || | | |||||||||| |||||||| ||||||||| ||||||| Sbjct 136581 AGAGGCCGATGCCGCCTGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGA 136640 Query 79709 TGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGT 79768 ||||||||||||||||||||||||| | ||| |||||||| ||| | ||| |||| Sbjct 136641 TGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCG 136700 Query 79769 TCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGAT 79828 ||| |||||||||||||| ||||||| ||||||||| ||| || | ||| || | Sbjct 136701 GCGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGGT 136760 Query 79829 CGTACGTCTCCTTGACGCGCGG--GAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCAT 79886 ||||||||| | ||||||| | ||||||||||||||||||||||||||||||||| Sbjct 136761 TGTACGTCTCGAT--CGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCAT 136818 Query 79887 GAAGAGGTACTGGGG 79901 || | || ||| || Sbjct 136819 GAGCATGTGCTGCGG 136833 Score = 385 bits (426), Expect = 5e-102 Identities = 535/742 (72%), Gaps = 8/742 (1%) Strand=Plus/Minus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTC--CCGCGAG 19160 || ||| || | ||||||| ||||||||||||||||| ||||||||| | ||||| | Sbjct 136833 CCGCAGCACATGCTCATGCGCGTCGCGGTCGGCATCCACGGCGACGACATTGACCGCGCG 136774 Query 19161 TCCGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTT 19220 || |||| ||| |||| ||| || || ||| ||||||||| ||||||| || | Sbjct 136773 ATCG--AGACGTACAACCTCATGTCGGAGCGGTACTTTACGCACGCGTCGCCGACGCTCT 136716 Query 19221 TCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATG 19280 |||||||||| ||| |||||||| | ||| || ||||| || | |||||||| | Sbjct 136715 TCAACGCCGGCACGCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAAGGACG 136656 Query 19281 ACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCG 19340 || || |||||||||||||| ||||||||| |||||||| |||||||||| | | | Sbjct 136655 ACTCGATCGAGGGCATCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACGGCAG 136596 Query 19341 GGGGTATCGGGATC-CACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACG 19399 | || ||||| || | | | | || ||||| ||| ||| | ||| || ||| Sbjct 136595 GCGGCATCGGCCTCTCGATCCAC-AACATCCGCGCGACCGGTTCGTACATCGCCGGCACG 136537 Query 19400 AACGGAGTAGCCGA-CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTA 19458 ||||| || ||| ||| ||| |||| ||||||||||| | |||||||||||| | || Sbjct 136536 AACGGC-TACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACGGCGCGCTA 136478 Query 19459 CGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCA 19518 |||| ||||||| ||| ||| ||| |||| |||||||||||||||||||||| ||||| Sbjct 136477 CGTCGACCAGGGAGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGTGGCA 136418 Query 19519 CGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTG 19578 ||| ||| || | || |||||||| || ||| |||||| || | |||||| | ||| Sbjct 136417 CGCCGACATCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGCGC 136358 Query 19579 TCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGA 19638 |||||| | ||| ||| | ||||| || ||||| ||||||||| || ||| || | Sbjct 136357 GCGCGACTTGTTCTTTGCCCTTTGGATCCCCGACCTCTTCATGGAGCGTGTCGAGCAGAA 136298 Query 19639 CGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGA 19698 || || |||| ||| | |||||| ||| || || || | ||| ||||||||||| Sbjct 136297 CGGCGACTGGCCCCTCTTCTGCCCGGCCGAGGCGCCCGGTCTCCACGAGGTCTACGGCGA 136238 Query 19699 GGCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCG 19758 | |||||| ||| | | | |||| |||| || |||| ||| Sbjct 136237 CGAGTTCAAGGAGCTCTTTGAAAAGTACGAGAAGGAGGGTCGCGCCAAGCGCACCATCCC 136178 Query 19759 GGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACAT 19818 |||| | | ||||| || ||||||| | |||||||||||| |||| || | ||| Sbjct 136177 CGCCCAGAAGCTCTGGTACGCCGTCCTCGAGGCCCAGGTCGAGACGGGCAACCCCTTCAT 136118 Query 19819 GTGCTACAAGGACGCCGCGAAC 19840 | ||||||||| ||||| ||| Sbjct 136117 GCTCTACAAGGATGCCGCCAAC 136096 Score = 221 bits (244), Expect = 1e-52 Identities = 620/943 (66%), Gaps = 58/943 (6%) Strand=Plus/Plus Query 78184 GCGCGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGC 78243 ||||| || || | ||||||||||||||||||||||| |||||||||||||| | |||| Sbjct 134956 GCGCGGGTGCGGAGGTAGTACATGCCCGTCTTGAGACCTTTCTTCCATCCGTAGAAGTGC 135015 Query 78244 ATACTCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGG 78303 || || |||| |||| |||| | | | || |||||||||||| |||||| Sbjct 135016 ATCGACGTGAGCTGCGCCATGGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGG 135075 Query 78304 TCGATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAG 78363 |||||| |||| ||||||||||| || | ||||||||| |||||||| |||||||| Sbjct 135076 TCGATGAACGCGCCGCGGTCGGCGGCGAGGTCGATGACGACCTTTTGCGAGATCTCCCAC 135135 Query 78364 ATGGTCCGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCAGCGCTTGTACGCTCCCACCG 78423 | |||| ||| ||| ||| ||||| || ||||| | | | | | || ||| Sbjct 135136 ACGGTCTTGTAGATGCGCTTGAGCTCGTCGGGGATGCCGGGGACGTTCTGGATCGAGCCG 135195 Query 78424 --GCTCGC-ACAATTTCATTCTTAATTTGAGGGTTCCAGCGATTGATCTTCTGAAGATCC 78480 | ||| | || ||||| || |||||| | | | || || Sbjct 135196 TTGTGCGCGATGATCGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCG 135255 Query 78481 CGGACCAGGTGCC---GGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAG 78537 ||| ||| ||| |||| | | |||||||||||| ||| ||||| |||| Sbjct 135256 CGG---AGGAGCCAGGGGTTGACGACCTGGAACTCGCCGGCGAGGACGCGGCGGGTGTAG 135312 Query 78538 ATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCG 78597 ||||||| ||||||||||||||| ||||||||| || | ||||||| |||||||||| Sbjct 135313 ATGTTGGACGTGTACGGCTCGAACGCCTCGTTGAAGCCGAGGATCTGGCTGGTCGAGGCG 135372 Query 78598 GTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTT- 78656 || ||||| || ||| || || || || || | || ||| | |||| |||| Sbjct 135373 GTAGGCATCGGCGCGCACACGAGCGAGTTGCGGATGCCGTGCTGCGCAATCTTCTCCTTC 135432 Query 78657 ---TAGGCC--GTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATA 78711 | |||| |||||| | || ||| || || ||||| || || | || Sbjct 135433 AACTCGGCCCAGTCCCACAGGTCCGTCGGCGTGACGTTCCACAGATCGTACTGCAAGAGG 135492 Query 78712 CCCTCGGACGCCGGCGA---------CCCCTTGAACGTCTCGTAAGATCC---CTC---- 78755 || | | ||| ||||| | ||||| ||| ||| | || ||| Sbjct 135493 CCGTGGCTCGCGGGCGAGCCGCCGTTCTCCTTGTACGAGGGGTAGTAGCCGGGCTCGCCA 135552 Query 78756 -----CTCCTTGGCG-AGT-----------TCGC---ATGACTCGAGCAGGGCCGCGTGG 78795 | | ||||| ||| |||| | ||||||| | || ||||| Sbjct 135553 GGGTGCGCGATGGCGTAGTCGCGAGCCATGTCGCACGACGACTCGATC---GCGGCGTGA 135609 Query 78796 TACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGG 78855 || | | ||||||||| |||||| | |||||| | | | |||||||| ||| Sbjct 135610 TAGATCGTCTCGAAGATCTGGACGTTGAGGTGGCGCGCTTCAGGCGAGTCGAACGGCAGG 135669 Query 78856 CCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGC 78915 | ||| ||||||| | ||||| || ||||| || |||||| ||||||| |||||||| Sbjct 135670 CGGAGGGCCATGAAGGCGTCGGCGAGACCCTGCACACCGATACCGATCGGGCGGTGGCGG 135729 Query 78916 ATGTTGCT-CTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCCGATCGATGACGCGGTTCAG 78974 | |||||| | || |||| ||| | ||||| |||| ||||||| ||||||||| Sbjct 135730 AAGTTGCTGCGCTC-GGCCTCCTTGACGGGGTAGTAGTTGACGTCGATGATGCGGTTCAG 135788 Query 78975 GTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCCTTT 79034 ||| |||||||||| || |||| || || ||| || | | ||| Sbjct 135789 GTTGTACGTGACGACCTTGACGACGTCGTGCAGCTTCTTGAAGTCGTACTCGCCGTTTTT 135848 Query 79035 GATGAAAGTCGGTAG-GCACAGCGATGCCAGGTTGCACACGGC 79076 |||||| | ||| || ||| | ||| || |||||||| ||||| Sbjct 135849 GATGAACGACGGGAGCGCA-ATCGACGCGAGGTTGCAGACGGC 135890 Score = 187 bits (206), Expect = 3e-42 Identities = 564/862 (65%), Gaps = 68/862 (8%) Strand=Plus/Minus Query 20014 GGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCCGACCGAGGCGGC 20073 |||||||||| || ||||| ||| ||||||| |||| ||||| | ||| ||| Sbjct 135804 GGTCGTCACGTACAACCTGAACCGCATCATCGACGTCAACTACTACCCCGTCAAGGAGGC 135745 Query 20074 ---GCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGA 20130 ||||| || | |||||||| ||||||| ||||| || ||||| || ||||| Sbjct 135744 CGAGCGCAGC---AACTTCCGCCACCGCCCGATCGGTATCGGTGTGCAGGGTCTCGCCGA 135688 Query 20131 CGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAACAAGGG 20190 || |||||| ||| |||| | |||||| || | |||||| | |||||| Sbjct 135687 CGCCTTCATGGCCCTCCGCCTGCCGTTCGACTCGCCTGAAGCGCGCCACCTCAACGTCCA 135628 Query 20191 CATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGA-----------ACT- 20238 ||||||||| | | || ||||| || || | |||||||| ||| Sbjct 135627 GATCTTCGAGACGATCTATCACGCCGCGATCGAGTCGTCGTGCGACATGGCTCGCGACTA 135568 Query 20239 CGCCAAAGAGGACG-------GCCCG-----TACGAGACGTTCAAGGGG---------TC 20277 ||||| | | || ||||| ||| ||| ||||| | || Sbjct 135567 CGCCATCGCGCACCCTGGCGAGCCCGGCTACTACCCCTCGTACAAGGAGAACGGCGGCTC 135508 Query 20278 GCCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCACTGAGAATGAGTTTTG 20337 ||||||| | | || || | ||| || ||||| |||||| || || | || Sbjct 135507 GCCCGCGAGCCACGGCCTCTTGCAGTACGATCTGTGGAACGTCACGCCGACGGACCTGTG 135448 Query 20338 GAGC---GCCC---TCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGT 20391 | | ||| | |||| |||| | ||||| | ||||||||| ||||| Sbjct 135447 GGACTGGGCCGAGTTGAAGGAGAAGATTGCGCAGCACGGCATCCGCAACTCG---CTCGT 135391 Query 20392 ---CGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGA 20448 |||||| ||||| |||||||||||| ||||||| | || ||||||||| ||||| Sbjct 135390 GTGCGCGCCGATGCCTACCGCCTCGACCAGCCAGATCCTCGGCTTCAACGAGGCGTTCGA 135331 Query 20449 GCCGTACACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAA 20508 |||||||||| ||||||||||| || || || ||||| |||||| || ||| Sbjct 135330 GCCGTACACGTCCAACATCTACACCCGCCGCGTCCTCGCCGGCGAGTTC--CA-GGTCGT 135274 Query 20509 CAAGCACCTGG----TCCGCGACTTGCAGAAGATCGATATGTGGTCGCCCAAAATTAAGA 20564 ||| | ||||| |||||||| | | || ||||| | || |||| Sbjct 135273 CAACC-CCTGGCTCCTCCGCGACCTCGTCGACCGCGGCCTGTGGAACGACGCGATGAAGA 135215 Query 20565 ATGAAATTGTC-CGAGC--CGGCGGGAGCGTCCAGGCATTG---GATATCCCCCAGAACC 20618 | || || || | |||| || ||||| | | |||||| | | | Sbjct 135214 ACACGATCATCGCGCACAACGGCTCGA---TCCAGAACGTCCCCGGCATCCCCGACGAGC 135158 Query 20619 TCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGG 20678 ||||| ||| |||| |||||| ||||| ||| | || ||| | |||||||| | || | Sbjct 135157 TCAAGCGCATCTACAAGACCGTGTGGGAGATCTCGCAAAAGGTCGTCATCGACCTCGCCG 135098 Query 20679 CCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGA 20738 |||| |||||||| | |||||||||||| ||||||||||| ||| | | | |||| Sbjct 135097 CCGACCGCGGCGCGTTCATCGACCAGTCGCAGTCGCTCAACGTCCACCTCTCGTCGCCGA 135038 Query 20739 GCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCA 20798 | ||||| |||| | || ||||| | ||||| ||| | || || ||||||||||||| Sbjct 135037 CCATGGCGCAGCTCACGTCGATGCACTTCTACGGATGGAAGAAAGGTCTCAAGACGGGCA 134978 Query 20799 TGTACTATCTGCGGACCCGAGC 20820 ||||||| || || ||||| || Sbjct 134977 TGTACTACCTCCGCACCCGCGC 134956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548523860651280