Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542265.1_202016-01-
27] 137 sequences; 21,492,894 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq116 165 9e-36
seq83 161 1e-34
seq2 125 8e-24
seq127 111 2e-19
seq47 104 3e-17
seq36 86.0 7e-12
>seq116
Length=981576
Score = 165 bits (182), Expect = 9e-36
Identities = 211/289 (73%), Gaps = 4/289 (1%)
Strand=Plus/Minus
Query 32054 AGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGT 32113
|||| | ||||| ||||||||| | | ||||| |||| || ||||||||||| || |
Sbjct 945920 AGGTCGGCCAGCTTTCGGGCTACATCTCGGAGCACTCGGCGTACCACCACGGCGACGCCT 945861
Query 32114 CGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACT 32173
|||| ||||||||||| ||| ||| || |||||||||||||| || ||| | |||
Sbjct 945860 CGCTGCAGGGCACCATCGTCGGCCTCGCGCAGAACTTTGTCGGCAGCAACAACATCAACG 945801
Query 32174 TACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCT 32233
| ||||| || || ||||| || || || ||| || |||||||| || || |||
Sbjct 945800 TGCTCGACCCGAACGGCCAGTTCGGTACGCGTCTCCAGGGCGGCAAGGACGCGGCCAGCG 945741
Query 32234 CCCGTTACATCTTCAC--CCGTCTCGCACCTTCGACGCGCAAGATTTTCGACCCGTCGGA 32291
| |||||||||||||| ||| |||| | ||||||| | | ||| |||| |||||
Sbjct 945740 CTCGTTACATCTTCACGAACGTGGCGCAGAT--CACGCGCACGCTCTTCCACCCCTCGGA 945683
Query 32292 CGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCG 32340
||| ||| | ||| | ||| | || ||||| ||| | ||||||||
Sbjct 945682 CGACGCGATCCTCGACTACCTTAACGACGACGGCCAGAGCATCGAGCCG 945634
>seq83
Length=1320507
Score = 161 bits (178), Expect = 1e-34
Identities = 174/228 (76%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || ||||||||||| || || || ||||| |||||
Sbjct 967980 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCG 967921
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || | ||||| || |||||||||||||||||||| ||||| ||||||
Sbjct 967920 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCCGACCAG 967861
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
||||| | || || || || ||||| || ||||| | ||| || || ||| ||||| ||
Sbjct 967860 CAGCGCTTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACGCTCAGC-GACTACAA 967802
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || || || ||||| || ||| | | ||||||||
Sbjct 967801 CATCCAGAAGGAGTCTACACTCCATCTGGTGTTGAGGTTGCGCGGTGG 967754
Score = 123 bits (136), Expect = 3e-23
Identities = 142/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 27442 ATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGAC 27501
|| ||||| ||||| ||||| || | ||| | || | ||||| || ||||||||
Sbjct 967649 ATCACTCTCGAGGTCGAGTCGTCCGACACCATCGACAACGTCAAGGCCAAGATTCAGGAT 967590
Query 27502 AAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGAT 27561
||||||||||| ||||| ||||| ||||| | || || || || ||||| ||||||||
Sbjct 967589 AAGGAGGGAATCCCTCCCGACCAACAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGAC 967530
Query 27562 GATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621
| |||||| || | || |||||| |||| || || || || || || || || |||||
Sbjct 967529 GGTCGTACTCTTTCGGATTATAATATCCAGAAAGAGTCGACCCTCCACCTCGTGCTGCGT 967470
Query 27622 CTTCGCGGTGG 27632
|| ||||| ||
Sbjct 967469 CTCCGCGGAGG 967459
Score = 109 bits (120), Expect = 6e-19
Identities = 114/150 (76%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543
|||||||| || |||||||||||||| || ||||| ||||||||||| | || || ||
Sbjct 967175 AAGGCTAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGCTTGATCTTCGCG 967116
Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603
|| ||||| || ||||| | || || || |||| || || |||| || || || ||
Sbjct 967115 GGGAAGCAGCTTGAGGACGGACGCACGCTTTCAGATTACAACATCCAGAAAGAGTCTACG 967056
Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
|| || || || | |||||||||||||||
Sbjct 967055 CTGCACCTGGTGCTTCGTCTTCGCGGTGGA 967026
>seq2
Length=1651214
Score = 125 bits (138), Expect = 8e-24
Identities = 117/149 (79%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543
||||| || || ||||||||||||||||| ||||| |||||||||||||| || || ||
Sbjct 1160294 AAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCGCG 1160353
Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603
|| ||||| |||||||||| |||||| || | || || || |||| || || || ||
Sbjct 1160354 GGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACC 1160413
Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| || || || ||||||| ||||| ||
Sbjct 1160414 CTCCACCTCGTGCTGCGTCTCCGCGGAGG 1160442
Score = 120 bits (132), Expect = 3e-22
Identities = 116/149 (78%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543
||||| || || ||||||||||||||||| ||||| |||||||||||||| || || ||
Sbjct 1160734 AAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCGCG 1160793
Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603
|| ||||| |||||||| | |||||| || | || || || |||| || || || ||
Sbjct 1160794 GGGAAGCAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACC 1160853
Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| || || || ||||||| ||||| ||
Sbjct 1160854 CTCCACCTCGTGCTGCGTCTCCGCGGAGG 1160882
>seq127
Length=988564
Score = 111 bits (122), Expect = 2e-19
Identities = 115/151 (76%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 27482 TGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTG 27541
||||||| || || |||||||||||||| || || || ||||||||||| || || || |
Sbjct 775628 TGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCG 775687
Query 27542 CTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCA 27601
| || ||||| |||||||| | || || || | ||||| || |||| ||||| || |
Sbjct 775688 CCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGA 775747
Query 27602 CTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || || || ||| | ||||| ||||| ||
Sbjct 775748 CCCTCCACCTCGTCCTCCGTCTCCGCGGCGG 775778
>seq47
Length=435211
Score = 104 bits (114), Expect = 3e-17
Identities = 102/132 (77%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543
||||| || || |||||||||||||| || || || ||||||||||| || || || ||
Sbjct 75859 AAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTCGCC 75918
Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603
|| ||||| |||||||| | || ||||| | ||||| || |||| ||||| || ||
Sbjct 75919 GGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACC 75978
Query 27604 CTTCATCTAGTC 27615
||||| || |||
Sbjct 75979 CTTCACCTCGTC 75990
>seq36
Length=702765
Score = 86.0 bits (94), Expect = 7e-12
Identities = 130/185 (70%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091
|| || || || || |||||||||||||||||||| || |||||||| ||||| | ||||
Sbjct 134956 GCGCGGGTGCGGAGGTAGTACATGCCCGTCTTGAGACCTTTCTTCCATCCGTAGAAGTGC 135015
Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151
|| || |||||| ||| | || || | | | || ||| || ||||| |||||
Sbjct 135016 ATCGACGTGAGCTGCGCCATGGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGG 135075
Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCAT 80211
|||||| || || || || || || | || || | |||||| | || |||||
Sbjct 135076 TCGATGAACGCGCCGCGGTCGGCGGCGAGGTCGATGACGACCTTTTGCGAGATCTCCCAC 135135
Query 80212 ACTGT 80216
|| ||
Sbjct 135136 ACGGT 135140
Score = 84.2 bits (92), Expect = 2e-11
Identities = 100/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 80694 GTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGAT 80753
|||||||| || || | |||||| |||| || || ||||| || ||||| ||||
Sbjct 135657 GTCGAACGGCAGGCGGAGGGCCATGAAGGCGTCGGCGAGACCCTGCACACCGATACCGAT 135716
Query 80754 CGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGAT 80813
|||||||||||| ||| |||||||||||| | ||||| |||| |||||
Sbjct 135717 CGGGCGGTGGCGGAAGTTGCTGCGCTCGGCCTCCTTGACGGGGTAGTAGTTGACGTCGAT 135776
Query 80814 GACGCGGTTCAGGTTG 80829
|| |||||||||||||
Sbjct 135777 GATGCGGTTCAGGTTG 135792
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570309423343440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |