Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542265.1_202016-01- 27] 137 sequences; 21,492,894 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq116 165 9e-36 seq83 161 1e-34 seq2 125 8e-24 seq127 111 2e-19 seq47 104 3e-17 seq36 86.0 7e-12 >seq116 Length=981576 Score = 165 bits (182), Expect = 9e-36 Identities = 211/289 (73%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 32054 AGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGT 32113 |||| | ||||| ||||||||| | | ||||| |||| || ||||||||||| || | Sbjct 945920 AGGTCGGCCAGCTTTCGGGCTACATCTCGGAGCACTCGGCGTACCACCACGGCGACGCCT 945861 Query 32114 CGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACT 32173 |||| ||||||||||| ||| ||| || |||||||||||||| || ||| | ||| Sbjct 945860 CGCTGCAGGGCACCATCGTCGGCCTCGCGCAGAACTTTGTCGGCAGCAACAACATCAACG 945801 Query 32174 TACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCT 32233 | ||||| || || ||||| || || || ||| || |||||||| || || ||| Sbjct 945800 TGCTCGACCCGAACGGCCAGTTCGGTACGCGTCTCCAGGGCGGCAAGGACGCGGCCAGCG 945741 Query 32234 CCCGTTACATCTTCAC--CCGTCTCGCACCTTCGACGCGCAAGATTTTCGACCCGTCGGA 32291 | |||||||||||||| ||| |||| | ||||||| | | ||| |||| ||||| Sbjct 945740 CTCGTTACATCTTCACGAACGTGGCGCAGAT--CACGCGCACGCTCTTCCACCCCTCGGA 945683 Query 32292 CGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCG 32340 ||| ||| | ||| | ||| | || ||||| ||| | |||||||| Sbjct 945682 CGACGCGATCCTCGACTACCTTAACGACGACGGCCAGAGCATCGAGCCG 945634 >seq83 Length=1320507 Score = 161 bits (178), Expect = 1e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || || ||||| ||||| Sbjct 967980 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCG 967921 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || |||||||||||||||||||| ||||| |||||| Sbjct 967920 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCCGACCAG 967861 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| | || || || || ||||| || ||||| | ||| || || ||| ||||| || Sbjct 967860 CAGCGCTTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACGCTCAGC-GACTACAA 967802 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || ||||| || ||| | | |||||||| Sbjct 967801 CATCCAGAAGGAGTCTACACTCCATCTGGTGTTGAGGTTGCGCGGTGG 967754 Score = 123 bits (136), Expect = 3e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 27442 ATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGAC 27501 || ||||| ||||| ||||| || | ||| | || | ||||| || |||||||| Sbjct 967649 ATCACTCTCGAGGTCGAGTCGTCCGACACCATCGACAACGTCAAGGCCAAGATTCAGGAT 967590 Query 27502 AAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGAT 27561 ||||||||||| ||||| ||||| ||||| | || || || || ||||| |||||||| Sbjct 967589 AAGGAGGGAATCCCTCCCGACCAACAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGAC 967530 Query 27562 GATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621 | |||||| || | || |||||| |||| || || || || || || || || ||||| Sbjct 967529 GGTCGTACTCTTTCGGATTATAATATCCAGAAAGAGTCGACCCTCCACCTCGTGCTGCGT 967470 Query 27622 CTTCGCGGTGG 27632 || ||||| || Sbjct 967469 CTCCGCGGAGG 967459 Score = 109 bits (120), Expect = 6e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 |||||||| || |||||||||||||| || ||||| ||||||||||| | || || || Sbjct 967175 AAGGCTAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGCTTGATCTTCGCG 967116 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| || ||||| | || || || |||| || || |||| || || || || Sbjct 967115 GGGAAGCAGCTTGAGGACGGACGCACGCTTTCAGATTACAACATCCAGAAAGAGTCTACG 967056 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || || || || | ||||||||||||||| Sbjct 967055 CTGCACCTGGTGCTTCGTCTTCGCGGTGGA 967026 >seq2 Length=1651214 Score = 125 bits (138), Expect = 8e-24 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || ||||||||||||||||| ||||| |||||||||||||| || || || Sbjct 1160294 AAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCGCG 1160353 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| |||||||||| |||||| || | || || || |||| || || || || Sbjct 1160354 GGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACC 1160413 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || ||||||| ||||| || Sbjct 1160414 CTCCACCTCGTGCTGCGTCTCCGCGGAGG 1160442 Score = 120 bits (132), Expect = 3e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || ||||||||||||||||| ||||| |||||||||||||| || || || Sbjct 1160734 AAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGTCTTATCTTCGCG 1160793 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| |||||||| | |||||| || | || || || |||| || || || || Sbjct 1160794 GGGAAGCAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACC 1160853 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || ||||||| ||||| || Sbjct 1160854 CTCCACCTCGTGCTGCGTCTCCGCGGAGG 1160882 >seq127 Length=988564 Score = 111 bits (122), Expect = 2e-19 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 27482 TGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTG 27541 ||||||| || || |||||||||||||| || || || ||||||||||| || || || | Sbjct 775628 TGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCG 775687 Query 27542 CTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCA 27601 | || ||||| |||||||| | || || || | ||||| || |||| ||||| || | Sbjct 775688 CCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGA 775747 Query 27602 CTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || ||| | ||||| ||||| || Sbjct 775748 CCCTCCACCTCGTCCTCCGTCTCCGCGGCGG 775778 >seq47 Length=435211 Score = 104 bits (114), Expect = 3e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || |||||||||||||| || || || ||||||||||| || || || || Sbjct 75859 AAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTCGCC 75918 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| |||||||| | || ||||| | ||||| || |||| ||||| || || Sbjct 75919 GGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACC 75978 Query 27604 CTTCATCTAGTC 27615 ||||| || ||| Sbjct 75979 CTTCACCTCGTC 75990 >seq36 Length=702765 Score = 86.0 bits (94), Expect = 7e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 || || || || || |||||||||||||||||||| || |||||||| ||||| | |||| Sbjct 134956 GCGCGGGTGCGGAGGTAGTACATGCCCGTCTTGAGACCTTTCTTCCATCCGTAGAAGTGC 135015 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || || |||||| ||| | || || | | | || ||| || ||||| ||||| Sbjct 135016 ATCGACGTGAGCTGCGCCATGGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGG 135075 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCAT 80211 |||||| || || || || || || | || || | |||||| | || ||||| Sbjct 135076 TCGATGAACGCGCCGCGGTCGGCGGCGAGGTCGATGACGACCTTTTGCGAGATCTCCCAC 135135 Query 80212 ACTGT 80216 || || Sbjct 135136 ACGGT 135140 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 80694 GTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGAT 80753 |||||||| || || | |||||| |||| || || ||||| || ||||| |||| Sbjct 135657 GTCGAACGGCAGGCGGAGGGCCATGAAGGCGTCGGCGAGACCCTGCACACCGATACCGAT 135716 Query 80754 CGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGAT 80813 |||||||||||| ||| |||||||||||| | ||||| |||| ||||| Sbjct 135717 CGGGCGGTGGCGGAAGTTGCTGCGCTCGGCCTCCTTGACGGGGTAGTAGTTGACGTCGAT 135776 Query 80814 GACGCGGTTCAGGTTG 80829 || ||||||||||||| Sbjct 135777 GATGCGGTTCAGGTTG 135792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309423343440