Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542265.1_202016-01- 27] 137 sequences; 21,492,894 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq83 149 1e-30 seq47 149 1e-30 seq2 127 5e-24 seq127 114 3e-20 seq36 105 2e-17 seq44 89.7 1e-12 >seq83 Length=1320507 Score = 149 bits (164), Expect = 1e-30 Identities = 139/177 (79%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || |||||||| ||||| |||||||||| ||| || | || || Sbjct 967474 AGCACGAGGTGGAGGGTCGACTCTTTCTGGATATTATAATCCGAAAGAGTACGACCGTCC 967533 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| | ||| |||||||| ||||| | ||| ||||| ||| Sbjct 967534 TCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGTTGGTCGGGAGGGATTCCCTCCTTATCC 967593 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079 || ||||| || ||||| ||||||||||| || || ||||||||||||||| Sbjct 967594 TGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGAGTGATC 967650 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || || || || || ||||| || |||||||| || || || || | || || || Sbjct 967772 ACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCGTCCTCA 967831 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 ||||||||||| |||||||| | ||| || ||||| ||||| | ||| ||||||||||| Sbjct 967832 AGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGA 967891 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| || ||||| ||||||||||| || || |||||||| ||||| ||||| Sbjct 967892 ATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTG 967951 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| || || | |||||| Sbjct 967952 CCGGTGAGGGTCTTGACGAAGATCTGCAT 967980 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || ||||| || || |||||||| |||||||| ||||| | ||| || Sbjct 967033 CGAAGACGAAGCACCAGGTGCAGCGTAGACTCTTTCTGGATGTTGTAATCTGAAAGCGTG 967092 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||| || || |||||||| || |||||||| | ||| || ||||| ||||| | || Sbjct 967093 CGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATACCC 967152 Query 211014 TCCTTGTCCTGGATCTT 211030 ||||||||||||||||| Sbjct 967153 TCCTTGTCCTGGATCTT 967169 >seq47 Length=435211 Score = 149 bits (164), Expect = 1e-30 Identities = 139/177 (79%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| |||||||| || ||||| || |||||||| || |||| ||||| | || || Sbjct 75992 AGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCC 75933 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| ||||| || |||||||| || | || ||||||||| Sbjct 75932 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 75873 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079 |||||||| || ||||| ||||| ||||| || || |||||||| |||||| Sbjct 75872 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGATC 75816 >seq2 Length=1651214 Score = 127 bits (140), Expect = 5e-24 Identities = 105/128 (82%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || |||||||| |||||||| ||||||| ||| || | ||||| Sbjct 1160427 AGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCATCC 1160368 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || ||||||||||| || || ||||| ||||| | ||| ||||||||| Sbjct 1160367 TCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCC 1160308 Query 211023 TGGATCTT 211030 |||||||| Sbjct 1160307 TGGATCTT 1160300 Score = 123 bits (136), Expect = 6e-23 Identities = 104/128 (81%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || |||||||| |||||||| ||||||| ||| || | || || Sbjct 1160867 AGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCGTCC 1160808 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || ||||||||||| || || ||||| ||||| | ||| ||||||||| Sbjct 1160807 TCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCC 1160748 Query 211023 TGGATCTT 211030 |||||||| Sbjct 1160747 TGGATCTT 1160740 >seq127 Length=988564 Score = 114 bits (126), Expect = 3e-20 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || ||||| || |||||||| || |||| ||| || | || || Sbjct 775763 AGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCC 775704 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 775703 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 775644 Query 211023 TGGATCTT 211030 |||||||| Sbjct 775643 TGGATCTT 775636 >seq36 Length=702765 Score = 105 bits (116), Expect = 2e-17 Identities = 171/246 (70%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 178120 GGCATCTTTGTACGCAATGAAGGGCATTCCCACCTCAGCTTGAGCCACGAGAATGTGATG 178179 |||||| ||||| |||||||| | ||| ||| | || ||| |||| | | | Sbjct 136102 GGCATCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACGGCGTA 136161 Query 178180 CCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTA 178239 ||| |||| |||||| ||| || ||||| || || ||||||||||||| | Sbjct 136162 CCAGAGCTTCTGGGCGGGGATGGTGCGCTTGGCGCGACCCTCCTTCTCGTACTTTTCAAA 136221 Query 178240 GAGCTCCTCGAATTCCGGTCCATAGACATCATCGAGACCGGGAGCCTCATTGGGGCAGAA 178299 |||||||| ||| || || ||||| || | ||||||||| ||||| |||||||| Sbjct 136222 GAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGACCGGGCGCCTCGGCCGGGCAGAA 136281 Query 178300 GAGACTCCACTGACCGTCTTCCTTCACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGC 178359 ||| ||| | |||| | || || || | |||||||||||| | | |||| | ||| Sbjct 136282 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGATCCAAAGGGC 136341 Query 178360 ATAGAA 178365 | |||| Sbjct 136342 AAAGAA 136347 >seq44 Length=642075 Score = 89.7 bits (98), Expect = 1e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 210929 TTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAG 210988 ||| | ||| || |||| || || | || ||||| |||||||||| ||||||| || Sbjct 149076 TTGAAGGTTGTAGTCCGAGAGTGTGCGACCGTCTTCGAGCTGCTTGCGCTCGAAGATCAG 149017 Query 210989 GCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGAT 211048 ||| || ||||| || || || || ||||||||||||| ||| ||||| ||||| Sbjct 149016 GCGCTGCTGGTCGGGCGGGACGCCAAGCTTGTCCTGGATCAACACTTTGACGTTGTCGAT 148957 Query 211049 GGTGTCAGAGCT 211060 |||||| ||||| Sbjct 148956 GGTGTCCGAGCT 148945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159149965326005