Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542265.1_202016-01-
27] 137 sequences; 21,492,894 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq2 116 9e-21
seq83 111 4e-19
>seq2
Length=1651214
Score = 116 bits (128), Expect = 9e-21
Identities = 108/137 (79%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| || | ||| || |||||||| || || ||||| |||| |||||||| | | |||
Sbjct 1160436 CGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTA 1160377
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| ||||| || ||||||||||| ||||||||||| || || |||||||| || || ||
Sbjct 1160376 CGACCATCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATTCCC 1160317
Query 225613 TCCTTGTCTTGGATCTT 225629
|||||||| ||||||||
Sbjct 1160316 TCCTTGTCCTGGATCTT 1160300
Score = 113 bits (124), Expect = 1e-19
Identities = 107/137 (78%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| || | ||| || |||||||| || || ||||| |||| |||||||| | | |||
Sbjct 1160876 CGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTA 1160817
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| || || || ||||||||||| ||||||||||| || || |||||||| || || ||
Sbjct 1160816 CGACCGTCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATTCCC 1160757
Query 225613 TCCTTGTCTTGGATCTT 225629
|||||||| ||||||||
Sbjct 1160756 TCCTTGTCCTGGATCTT 1160740
>seq83
Length=1320507
Score = 111 bits (122), Expect = 4e-19
Identities = 136/186 (73%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| || | ||| || |||||||| || || ||||| |||| ||| ||||| | | |||
Sbjct 967465 CGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATATTATAATCCGAAAGAGTA 967524
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| || || || ||||||||||| |||||||| | || ||||||||||| || || ||
Sbjct 967525 CGACCGTCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGTTGGTCGGGAGGGATTCCC 967584
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
||||| || || ||||| ||| || ||||||||||| || | || || || |
Sbjct 967585 TCCTTATCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGA 967644
Query 225673 GTGATC 225678
||||||
Sbjct 967645 GTGATC 967650
Score = 100 bits (110), Expect = 7e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 225499 CTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCA 225558
|||| || || ||||| || || || || |||| ||||| ||| | || | ||
Sbjct 967766 CTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCG 967825
Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618
|| || |||||||| || |||||||| | || || |||||||| || || || ||||||
Sbjct 967826 TCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTG 967885
Query 225619 TCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678
|| || ||||| ||| || ||||||||||| || | || || || | |||||
Sbjct 967886 TCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATG 967945
Query 225679 GTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|||||||| || | || || | ||| | |||||
Sbjct 967946 GTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 967980
Score = 98.7 bits (108), Expect = 2e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
||||| | || || ||||| || || || ||||| |||| |||||||| | | ||
Sbjct 967033 CGAAGACGAAGCACCAGGTGCAGCGTAGACTCTTTCTGGATGTTGTAATCTGAAAGCGTG 967092
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| || || || ||||||||||| |||||||| | || || |||||||| || |||||
Sbjct 967093 CGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATACCC 967152
Query 225613 TCCTTGTCTTGGATCTT 225629
|||||||| ||||||||
Sbjct 967153 TCCTTGTCCTGGATCTT 967169
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192529106735078
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |