Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542265.1_202016-01- 27] 137 sequences; 21,492,894 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq83 111 4e-19 seq2 87.8 4e-12 >seq83 Length=1320507 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || ||||| || |||||||| || ||||||||||| ||| | || | || || || Sbjct 967772 ACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGACCGTCCTCA 967831 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || || || |||||||| | | ||||||||| | | |||||| ||||| || ||| Sbjct 967832 AGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGA 967891 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || || ||||| | || | | |||| ||| ||| || || || || || || ||| Sbjct 967892 ATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTG 967951 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||| ||||||| |||||| Sbjct 967952 CCGGTGAGGGTCTTGACGAAGATCTGCAT 967980 >seq2 Length=1651214 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || |||||||| |||||||||||||| | | ||| | ||||| Sbjct 1160427 AGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCATCC 1160368 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||||| ||||||||||| | ||||||||| | | |||||| ||||| || Sbjct 1160367 TCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCC 1160308 Query 152013 TGAATTTT 152020 || || || Sbjct 1160307 TGGATCTT 1160300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153818774683927