Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542265.1_202016-01-
27] 137 sequences; 21,492,894 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq83 132 4e-26
seq127 131 2e-25
seq47 118 1e-21
seq2 89.7 5e-13
seq44 82.4 7e-11
>seq83
Length=1320507
Score = 132 bits (146), Expect = 4e-26
Identities = 169/230 (73%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| | | ||||||||||| || || ||||||||| ||||| ||||||
Sbjct 967753 GCCACCGCGCAACCTCAACACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGCT 967812
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||| ||||| |||| || ||||||||||| ||||| |||| |||||| ||||| | ||
Sbjct 967813 GAGCGTGCGACCGTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 967872
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| | |||||||||| ||| | || || | ||| | | | ||||| ||||| |
Sbjct 967873 GATTCCCTCCTTGTCC-TGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGA 967931
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||| | || || || || || || || ||||| ||||| |||||||||
Sbjct 967932 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 967981
Score = 100 bits (110), Expect = 3e-16
Identities = 134/184 (73%), Gaps = 2/184 (1%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| ||||| | ||| || || || || ||| ||||| || ||||| || ||
Sbjct 967458 GCCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATATTATAATCCGA 967517
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| || || |||| ||||||||||| || ||||| |||| |||||||||||| | ||
Sbjct 967518 AAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGTTGGTCGGGAGG 967577
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| | |||||| ||| ||| | || || | ||| | | | |||||| |||||| |
Sbjct 967578 GATTCCCTCCTTATCC-TGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCGA 967636
Query 41814 CCTC 41817
||||
Sbjct 967637 CCTC 967640
>seq127
Length=988564
Score = 131 bits (144), Expect = 2e-25
Identities = 120/152 (79%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||||||||| ||||| | || || || || || ||||||||| ||||| ||||| ||
Sbjct 775779 GCCGCCGCGGAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 775720
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| ||||| |||| |||||||||||||||||||| ||||||||||| ||||| | |||
Sbjct 775719 AAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGG 775660
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCA 41786
| || |||||||||| ||| || |||||
Sbjct 775659 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCA 775628
>seq47
Length=435211
Score = 118 bits (130), Expect = 1e-21
Identities = 91/108 (84%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
||||||||| ||||| ||||| ||||||||||| |||| ||||||||||||||||||||
Sbjct 75972 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 75913
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778
|| |||||||| ||||| | ||| | || |||||||||| ||| ||
Sbjct 75912 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTT 75865
>seq2
Length=1651214
Score = 89.7 bits (98), Expect = 5e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| ||||| | ||| || || || || ||| ||||| ||||| || || ||
Sbjct 1160883 GCCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGA 1160824
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| || || |||| ||||||||||| || ||||| || || ||||| ||||| | ||
Sbjct 1160823 AAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGG 1160764
Query 41755 AACGCTCTCCTTGTCCATGATTTT 41778
| | |||||||||| ||| ||
Sbjct 1160763 GATTCCCTCCTTGTCCTGGATCTT 1160740
Score = 82.4 bits (90), Expect = 7e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| | ||| || || || || ||| ||||| ||||| || || ||
Sbjct 1160442 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 1160383
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || | || ||||||||||| || ||||| || || ||||| ||||| | ||
Sbjct 1160382 AGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGG 1160323
Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778
| | |||||||||| ||| ||
Sbjct 1160322 ATTCCCTCCTTGTCCTGGATCTT 1160300
>seq44
Length=642075
Score = 82.4 bits (90), Expect = 7e-11
Identities = 102/137 (74%), Gaps = 2/137 (1%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCT-GAATGTTATAGTCGG 41693
|||||| ||||| || ||||| |||| || | | ||| | ||| ||| ||||| |
Sbjct 149118 GCCGCCACGTAGGCGAGTGACCAGGTGCAAGGT-CGCGCCTCGTTGAAGGTTGTAGTCCG 149060
Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753
|||| ||||| |||| ||||||||||||| |||| ||||||||||| ||||| | |
Sbjct 149059 AGAGTGTGCGACCGTCTTCGAGCTGCTTGCGCTCGAAGATCAGGCGCTGCTGGTCGGGCG 149000
Query 41754 GAACGCTCTCCTTGTCC 41770
| |||| |||||||
Sbjct 148999 GGACGCCAAGCTTGTCC 148983
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462303208304400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |