Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01- 27] 61 sequences; 20,750,089 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq11 104 3e-17 >seq11 Length=389204 Score = 104 bits (114), Expect = 3e-17 Identities = 360/555 (65%), Gaps = 14/555 (3%) Strand=Plus/Minus Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 54069 ||| || |||| | || || || | ||| ||||| || |||||||| || || | || Sbjct 262040 CCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCAGAGGGCAAAGAA 261981 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129 | || | | | ||||| || || ||||| || ||||||||| | | Sbjct 261980 CAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAA 261921 Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCC 54189 || || | |||||||| || | ||| |||| | | || || || ||||| || || Sbjct 261920 GATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCGCC 261861 Query 54190 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 54249 ||| || | ||| | |||||||| || || || | | ||| || || || || || || Sbjct 261860 CTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGA 261801 Query 54250 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 54309 || || || |||| ||| || || | || || || || || || ||||| Sbjct 261800 GTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGTGGATCGAGAGACC 261741 Query 54310 TATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCT 54368 || || || ||| | || ||||| | ||||| ||| || | ||| || |||||||||| Sbjct 261740 GATGCCGCCGGCCGTCTTGGAGATGAGCGCGCA-CGTCTTGAGCGTGTCGTAGATGCCCT 261682 Query 54369 CTATACTATCATCCATCAT-GTTAAGTAGAA-AACAGCTAGACATTTGGTGACGACTAGT 54426 | || || ||| |||| || | | ||| || | ||| | || || | || Sbjct 261681 CGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGGC--GT 261624 Query 54427 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 54486 || || || || | || || || ||||||||||| | || || | || ||||| Sbjct 261623 GCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACCGCTCCGACATGAGGTTGTA 261564 Query 54487 CGTCTCGATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCATTA 54542 ||||||||| || || || || || | |||| || || ||||||||||| | Sbjct 261563 CGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATG----CCGACCGCGACACGCATGA 261508 Query 54543 ACATGTGCTGAGGTC 54557 ||||||||| |||| Sbjct 261507 GCATGTGCTGCGGTC 261493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721147287280