Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01- 27] 61 sequences; 20,750,089 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq6 125 8e-24 >seq6 Length=733724 Score = 125 bits (138), Expect = 8e-24 Identities = 141/186 (76%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 145672 AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGG 145731 ||||| ||| || ||||| ||||||| |||||||||||||||||| || || | || Sbjct 242228 AGCTGCGTCTTGAGCGGCTCGACGTGGTCGAGGTAGACGTGCGCGTCGCCGAGTTGGAGG 242287 Query 145732 ATGAAGTCCC-CGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTA 145790 ||||| || ||| ||| | | |||| | |||||| ||||| ||||| |||| ||| Sbjct 242288 ATGAACTCATGCGGTATCGTGTCG-GTGACGAGGGCGATCATGTGCGTCAGGAGGGCGTA 242346 Query 145791 GCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCA 145850 ||| |||||||||||||| || || || | ||| | ||||||||||||| |||| Sbjct 242347 CGAGGCGATGTTGAAGGGCACGCCGAGGCCGAGGTCGGCAGAGCGCTGGTACATGAGGCA 242406 Query 145851 GGAGAG 145856 |||||| Sbjct 242407 GGAGAG 242412 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 146069 ACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGGA 146128 ||||||||||||| |||| || || |||| |||| || ||| | | |||||| Sbjct 242782 ACCCGTAGACGGGTCCCAAATCACCCACTTCCCGGTGCTGCAAGCCGCGCGAGTCGAGGA 242841 Query 146129 AGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCATTGGAGT 146188 | || ||| |||||| | |||||||||||||||||| || | | | | | || |||| Sbjct 242842 ACTCTCGGCTGCCGTTGCCATCCCAGATCTTGACGCCCTTCTCCGCCAACACCTTCGAGT 242901 Query 146189 CCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCT 146248 | ||| | ||| || ||||| | |||||| |||| || || | | | ||||| | | Sbjct 242902 CGGTGCATCCCTCGACAAACCACAACAGCTCCTCGATGATGCCGCGCGAAAAGACGCGTT 242961 Query 146249 TGGTGGTCAGCAGGGGGA 146266 |||| |||| || |||| Sbjct 242962 TGGTCGTCAAGAGCGGGA 242979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590076350066440