Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01- 27] 61 sequences; 20,750,089 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq59 136 4e-27 seq15 136 4e-27 seq57 122 9e-23 seq1 109 6e-19 seq4 104 2e-17 seq12 96.9 4e-15 seq60 89.7 5e-13 >seq59 Length=937750 Score = 136 bits (150), Expect = 4e-27 Identities = 135/172 (78%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGG-CCGC 117027 || ||| || | ||||||||||||||||||| |||||| | | | ||| | ||| Sbjct 884947 CCCTGCATCCAGAAGAAGGCCGAGTGGGCGCTCACTTGGATCTCGGAC-GAGCGCTCCGT 884889 Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087 ||||||||||||||| || || ||||| |||||||||||| ||||||| || ||| || Sbjct 884888 CTTCGGCGAGCGCCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTT 884829 Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTC 117139 ||| |||| || ||||||||||| |||||| | |||||||| || || ||| Sbjct 884828 CGCGTCCATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACCTTC 884777 Score = 105 bits (116), Expect = 7e-18 Identities = 202/295 (68%), Gaps = 2/295 (1%) Strand=Plus/Minus Query 117143 AACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAG 117202 |||||||||||||| | ||||||||||| || |||||||||||| | || ||| | Sbjct 884675 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 884616 Query 117203 CATTTGGTGCAGCGACCG-AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGC 117261 || | | || || || | | || || ||| | ||| | ||| ||||||| Sbjct 884615 CACCTCGAGCGCCGCCCTCACCCCGAAACG-GTCGAGCGCATCATTCGCGAGGCGGTCGA 884557 Query 117262 CATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGA 117321 ||||||||| ||||||||||| |||||||| || || | || | || |||| Sbjct 884556 GATCGAGCAGGAGTTCCTCACCGAGGCGCTGCCCGTCAAGCTTATCGGCATGAACAGCGA 884497 Query 117322 AACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGC 117381 |||| || |||||||||||||| || ||| | |||| ||| || | | || Sbjct 884496 CCTCATGTGCCAGTACATCGAGTTCGTGGCAGACCGATTGCTTATCGCACTCGGCAACGA 884437 Query 117382 CAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTCCTTGGAG 117436 ||| |||| ||| | |||||| | ||||||||| || | ||||| ||||| Sbjct 884436 GAAGATCTACCACAAGGAGAACCCGTTCGACTTTATGGACATGATCTCGATGGAG 884382 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||||||||| | |||||||| || ||||||| |||||| || ||||| || Sbjct 935947 GACAAGGAGGGCATCCCTCCCGACCAGCAGCGTCTCATCTTCGCGGGGAAGCAGCTCGAG 936006 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| || || || || |||||||||||||| ||| | || || || || ||| || Sbjct 936007 GACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACCCTCCACCTCGTGCTG 936066 Query 40903 CG 40904 || Sbjct 936067 CG 936068 >seq15 Length=278969 Score = 136 bits (150), Expect = 4e-27 Identities = 137/178 (77%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 116689 GGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCAT 116748 |||| | || |||||| | | |||||||| || ||| ||||||||||| || ||||| Sbjct 243782 GGACATTTCGAAGGACCTGTGGGACTGGGACCGACTGACGGACAACGAGCGGCACTTCAT 243841 Query 116749 CAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGA 116808 | ||| || || ||||| ||||||||| ||||||||||| |||||||| |||| || Sbjct 243842 CTCGCATGTCCTCGCCTTCTTCGCCGCCTCGGACGGCATCGTGAACGAGAACTTGGTGGA 243901 Query 116809 GCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATC 116866 | | ||| | ||||||||| | |||||||| || || |||||||| || |||||| Sbjct 243902 GAGGTTCTCGGCCGAGGTGCAGATCGCCGAGGCCCGCTGTTTCTACGGTTTCCAGATC 243959 Score = 118 bits (130), Expect = 1e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 ||||||||||||||||||| || |||||| | | | | |||| ||| | || || | Sbjct 244189 AGAAGGCCGAGTGGGCGCTTCGATGGATCTCGGACCCTGGCGCCGTCTTTGCGGAACGAC 244248 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| || ||||| || ||||||||| ||||||| || ||| |||||| | || || | Sbjct 244249 TGGTCGCTTTCGCCGCTGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCCTCGATCTTCT 244308 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTC 117139 |||||||||| || ||| | |||||||| |||| ||| Sbjct 244309 GGCTCAAGAAGCGGGGCTTGATGCCCGGTTTGACGTTC 244346 >seq57 Length=1280291 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| |||| || || | | Sbjct 959825 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTCG 959766 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||||| || |||| ||||| ||||||||||| | |||||| Sbjct 959765 GACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 959706 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| |||||| || ||||| || || | || || || || |||||| Sbjct 959705 CAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAAC 959646 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| | || || || || ||| |||| Sbjct 959645 ATCCAGAAGGAGTCGACCCTTCACCTCGTGCTGCG 959611 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 40726 ATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGA 40784 |||||| |||| ||||| | |||||| | | |||| |||||| || |||| || Sbjct 958871 ATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACG-TCAAGGCCAAGATTCAGGA 958813 Query 40785 CAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGA 40844 ||| ||||||||||| | |||||||| || | |||| |||||| || ||||| || || Sbjct 958812 CAAGGAGGGCATCCCGCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTTGAGGA 958753 Query 40845 CGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || ||||| || | || |||||||| || ||||| | || ||||| || || ||| | Sbjct 958752 CGGACGCACGCTTCAAGATTACAACATTCAAAAGGAATCGACCCTGCACCTCGTTTTGAG 958693 Query 40905 CTTGAGGGGCGG 40916 ||| | || || Sbjct 958692 GTTGCGCGGTGG 958681 >seq1 Length=1786154 Score = 109 bits (120), Expect = 6e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | ||||| |||||||||||| | |||||||| || | |||| || Sbjct 479938 TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTGATCTTCG 479997 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 ||||||| ||||| || |||| ||||| ||| ||||||||||||||||||||| | | Sbjct 479998 CGGGCAAGCAGCTCGAGGACGGCCGCACTCTCTCGGACTACAACATCCAGAAGGAGTCGA 480057 Query 40886 CGCTGCATCTAGT 40898 | || || || || Sbjct 480058 CCCTCCACCTCGT 480070 >seq4 Length=766227 Score = 104 bits (114), Expect = 2e-17 Identities = 129/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 40726 ATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGA 40784 |||||| |||| ||||| | | |||| | | |||| |||||| || || | || Sbjct 226822 ATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACG-TCAAGGCCAAGATCCAGGA 226764 Query 40785 CAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGA 40844 ||| |||||||||||| | |||||||| || ||||||| || ||||| ||||| || || Sbjct 226763 CAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGA 226704 Query 40845 CGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||| || ||||||||||| ||||||||| | || || || || || Sbjct 226703 CGGCCGCACTCTTTCTGACTACAACATTCAGAAGGAGTCGACCCTTCACCTCGT 226650 >seq12 Length=324675 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | ||||| ||||||||||| | |||||||| || ||||| | || Sbjct 137360 TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGGCTCATGTTCG 137419 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 |||| || ||||| || ||| ||||| ||| | |||||||| | || | ||| | | Sbjct 137420 CGGGGAAGCAGCTCGAGGACAGCCGCACGCTCGAAGACTACAAGGTTCAAAGGGATTCGA 137479 Query 40886 CGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 | || ||||| || |||||| | | ||||||| Sbjct 137480 CCCTTCATCTCGTCTTGCGCCTACGCGGCGGCG 137512 >seq60 Length=931651 Score = 89.7 bits (98), Expect = 5e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||||||||| | |||||||| || ||| | | || ||||| |||||||| Sbjct 23496 GACAAGGAGGGCATCCCGCCTGACCAGCAGCGCCTCTTGTTCGGCGGCAAGCAGCTGGAG 23437 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| ||||||||| ||| ||| | || | || ||||||||||| || || || Sbjct 23436 GACGCCCGCACCCTCGCCGAGTACTGCGTCGCGCGTGATGCCACGCTGCACCTGCTGCTG 23377 Query 40903 CGCTTGAGGGGCGGCGG 40919 ||| || | ||||| || Sbjct 23376 CGCCTGCGCGGCGGGGG 23360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218807145360