Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01-
27] 61 sequences; 20,750,089 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq59 136 4e-27
seq15 136 4e-27
seq57 122 9e-23
seq1 109 6e-19
seq4 104 2e-17
seq12 96.9 4e-15
seq60 89.7 5e-13
>seq59
Length=937750
Score = 136 bits (150), Expect = 4e-27
Identities = 135/172 (78%), Gaps = 2/172 (1%)
Strand=Plus/Minus
Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGG-CCGC 117027
|| ||| || | ||||||||||||||||||| |||||| | | | ||| | |||
Sbjct 884947 CCCTGCATCCAGAAGAAGGCCGAGTGGGCGCTCACTTGGATCTCGGAC-GAGCGCTCCGT 884889
Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087
||||||||||||||| || || ||||| |||||||||||| ||||||| || ||| ||
Sbjct 884888 CTTCGGCGAGCGCCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTT 884829
Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTC 117139
||| |||| || ||||||||||| |||||| | |||||||| || || |||
Sbjct 884828 CGCGTCCATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACCTTC 884777
Score = 105 bits (116), Expect = 7e-18
Identities = 202/295 (68%), Gaps = 2/295 (1%)
Strand=Plus/Minus
Query 117143 AACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAG 117202
|||||||||||||| | ||||||||||| || |||||||||||| | || ||| |
Sbjct 884675 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 884616
Query 117203 CATTTGGTGCAGCGACCG-AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGC 117261
|| | | || || || | | || || ||| | ||| | ||| |||||||
Sbjct 884615 CACCTCGAGCGCCGCCCTCACCCCGAAACG-GTCGAGCGCATCATTCGCGAGGCGGTCGA 884557
Query 117262 CATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGA 117321
||||||||| ||||||||||| |||||||| || || | || | || ||||
Sbjct 884556 GATCGAGCAGGAGTTCCTCACCGAGGCGCTGCCCGTCAAGCTTATCGGCATGAACAGCGA 884497
Query 117322 AACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGC 117381
|||| || |||||||||||||| || ||| | |||| ||| || | | ||
Sbjct 884496 CCTCATGTGCCAGTACATCGAGTTCGTGGCAGACCGATTGCTTATCGCACTCGGCAACGA 884437
Query 117382 CAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTCCTTGGAG 117436
||| |||| ||| | |||||| | ||||||||| || | ||||| |||||
Sbjct 884436 GAAGATCTACCACAAGGAGAACCCGTTCGACTTTATGGACATGATCTCGATGGAG 884382
Score = 95.1 bits (104), Expect = 1e-14
Identities = 94/122 (77%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| ||||||||||| | |||||||| || ||||||| |||||| || ||||| ||
Sbjct 935947 GACAAGGAGGGCATCCCTCCCGACCAGCAGCGTCTCATCTTCGCGGGGAAGCAGCTCGAG 936006
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902
|||| || || || || |||||||||||||| ||| | || || || || ||| ||
Sbjct 936007 GACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACCCTCCACCTCGTGCTG 936066
Query 40903 CG 40904
||
Sbjct 936067 CG 936068
>seq15
Length=278969
Score = 136 bits (150), Expect = 4e-27
Identities = 137/178 (77%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 116689 GGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCAT 116748
|||| | || |||||| | | |||||||| || ||| ||||||||||| || |||||
Sbjct 243782 GGACATTTCGAAGGACCTGTGGGACTGGGACCGACTGACGGACAACGAGCGGCACTTCAT 243841
Query 116749 CAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGA 116808
| ||| || || ||||| ||||||||| ||||||||||| |||||||| |||| ||
Sbjct 243842 CTCGCATGTCCTCGCCTTCTTCGCCGCCTCGGACGGCATCGTGAACGAGAACTTGGTGGA 243901
Query 116809 GCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATC 116866
| | ||| | ||||||||| | |||||||| || || |||||||| || ||||||
Sbjct 243902 GAGGTTCTCGGCCGAGGTGCAGATCGCCGAGGCCCGCTGTTTCTACGGTTTCCAGATC 243959
Score = 118 bits (130), Expect = 1e-21
Identities = 121/158 (77%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041
||||||||||||||||||| || |||||| | | | | |||| ||| | || || |
Sbjct 244189 AGAAGGCCGAGTGGGCGCTTCGATGGATCTCGGACCCTGGCGCCGTCTTTGCGGAACGAC 244248
Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101
|||| || ||||| || ||||||||| ||||||| || ||| |||||| | || || |
Sbjct 244249 TGGTCGCTTTCGCCGCTGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCCTCGATCTTCT 244308
Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTC 117139
|||||||||| || ||| | |||||||| |||| |||
Sbjct 244309 GGCTCAAGAAGCGGGGCTTGATGCCCGGTTTGACGTTC 244346
>seq57
Length=1280291
Score = 122 bits (134), Expect = 9e-23
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| ||||| ||||||||| |||| || || | |
Sbjct 959825 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTCG 959766
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | |||||| || |||| ||||| ||||||||||| | ||||||
Sbjct 959765 GACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 959706
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || | |||| |||||| || ||||| || || | || || || || ||||||
Sbjct 959705 CAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAAC 959646
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|||||||||||| | || || || || ||| ||||
Sbjct 959645 ATCCAGAAGGAGTCGACCCTTCACCTCGTGCTGCG 959611
Score = 105 bits (116), Expect = 7e-18
Identities = 140/192 (73%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 40726 ATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGA 40784
|||||| |||| ||||| | |||||| | | |||| |||||| || |||| ||
Sbjct 958871 ATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACG-TCAAGGCCAAGATTCAGGA 958813
Query 40785 CAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGA 40844
||| ||||||||||| | |||||||| || | |||| |||||| || ||||| || ||
Sbjct 958812 CAAGGAGGGCATCCCGCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTTGAGGA 958753
Query 40845 CGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|| ||||| || | || |||||||| || ||||| | || ||||| || || ||| |
Sbjct 958752 CGGACGCACGCTTCAAGATTACAACATTCAAAAGGAATCGACCCTGCACCTCGTTTTGAG 958693
Query 40905 CTTGAGGGGCGG 40916
||| | || ||
Sbjct 958692 GTTGCGCGGTGG 958681
>seq1
Length=1786154
Score = 109 bits (120), Expect = 6e-19
Identities = 104/133 (78%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825
|||||| || || | ||||| |||||||||||| | |||||||| || | |||| ||
Sbjct 479938 TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTGATCTTCG 479997
Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885
||||||| ||||| || |||| ||||| ||| ||||||||||||||||||||| | |
Sbjct 479998 CGGGCAAGCAGCTCGAGGACGGCCGCACTCTCTCGGACTACAACATCCAGAAGGAGTCGA 480057
Query 40886 CGCTGCATCTAGT 40898
| || || || ||
Sbjct 480058 CCCTCCACCTCGT 480070
>seq4
Length=766227
Score = 104 bits (114), Expect = 2e-17
Identities = 129/174 (74%), Gaps = 2/174 (1%)
Strand=Plus/Minus
Query 40726 ATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGA 40784
|||||| |||| ||||| | | |||| | | |||| |||||| || || | ||
Sbjct 226822 ATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACG-TCAAGGCCAAGATCCAGGA 226764
Query 40785 CAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGA 40844
||| |||||||||||| | |||||||| || ||||||| || ||||| ||||| || ||
Sbjct 226763 CAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGA 226704
Query 40845 CGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|| ||||| || ||||||||||| ||||||||| | || || || || ||
Sbjct 226703 CGGCCGCACTCTTTCTGACTACAACATTCAGAAGGAGTCGACCCTTCACCTCGT 226650
>seq12
Length=324675
Score = 96.9 bits (106), Expect = 4e-15
Identities = 113/153 (74%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825
|||||| || || | ||||| ||||||||||| | |||||||| || ||||| | ||
Sbjct 137360 TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGGCTCATGTTCG 137419
Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885
|||| || ||||| || ||| ||||| ||| | |||||||| | || | ||| | |
Sbjct 137420 CGGGGAAGCAGCTCGAGGACAGCCGCACGCTCGAAGACTACAAGGTTCAAAGGGATTCGA 137479
Query 40886 CGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918
| || ||||| || |||||| | | |||||||
Sbjct 137480 CCCTTCATCTCGTCTTGCGCCTACGCGGCGGCG 137512
>seq60
Length=931651
Score = 89.7 bits (98), Expect = 5e-13
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| ||||||||||| | |||||||| || ||| | | || ||||| ||||||||
Sbjct 23496 GACAAGGAGGGCATCCCGCCTGACCAGCAGCGCCTCTTGTTCGGCGGCAAGCAGCTGGAG 23437
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902
|||| ||||||||| ||| ||| | || | || ||||||||||| || || ||
Sbjct 23436 GACGCCCGCACCCTCGCCGAGTACTGCGTCGCGCGTGATGCCACGCTGCACCTGCTGCTG 23377
Query 40903 CGCTTGAGGGGCGGCGG 40919
||| || | ||||| ||
Sbjct 23376 CGCCTGCGCGGCGGGGG 23360
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515218807145360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |