Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01-
27] 61 sequences; 20,750,089 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq57 111 2e-19
seq4 91.5 2e-13
seq59 87.8 2e-12
>seq57
Length=1280291
Score = 111 bits (122), Expect = 2e-19
Identities = 142/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || |||||||| | ||||| || | || || |||||||| || |||||
Sbjct 959634 CTCCTTCTGGATGTTGTAATCCGAAAGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAA 959693
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110
|| | ||||||||||||| || | || |||||||||| ||| | || | ||||
Sbjct 959694 GATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCC-TGAATCTTGGCCTTGACAT 959752
Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | |||||| ||| || || |||| |||||||| ||||| || || ||||| |
Sbjct 959753 TGTCGATCGTGTCCGACGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGA 959812
Query 43171 CAAAGATTTGCAT 43183
| ||||| |||||
Sbjct 959813 CGAAGATCTGCAT 959825
Score = 93.3 bits (102), Expect = 5e-14
Identities = 118/157 (75%), Gaps = 4/157 (3%)
Strand=Plus/Plus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||||||||| |||||||| || || || |||| || |||||||| || |||||
Sbjct 958717 TCCTTTTGAATGTTGTAATCTTGAAGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAG 958776
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111
|| | ||||||||||||| ||| | || |||||||||| ||| | || | |||| |||
Sbjct 958777 ATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC-TGAATCTTGGCCTTGA-CGT 958834
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
| | | ||||||| ||| || || |||| |||||
Sbjct 958835 TGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGAT 958871
>seq4
Length=766227
Score = 91.5 bits (100), Expect = 2e-13
Identities = 116/157 (74%), Gaps = 2/157 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| ||||| ||||| |||| ||||| || |||| || |||||||| || || ||
Sbjct 226667 CTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 226726
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
||||| ||||||||||| | || | || |||||||||| ||| || |||| |||
Sbjct 226727 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 226785
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
| | | |||||| ||| || || |||| |||||
Sbjct 226786 TGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGAT 226822
>seq59
Length=937750
Score = 87.8 bits (96), Expect = 2e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
||| || || || |||||||| | ||||| || |||| || |||||||| || |||||
Sbjct 936045 CTCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAA 935986
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099
||||| ||||||||||||| || | || |||||||||| ||| ||
Sbjct 935985 GATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTT 935938
Score = 84.2 bits (92), Expect = 3e-11
Identities = 131/182 (72%), Gaps = 4/182 (2%)
Strand=Plus/Minus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||| | ||||| |||| || |||||| ||||| || || || || || ||| |
Sbjct 936379 ACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTGAGCGTGCGCCC 936320
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
||| || |||||||| || ||||| || | ||||||||||| | ||| | || ||||||
Sbjct 936319 GTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTT 936260
Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 43145
|||| ||| | || | |||| ||| | | | ||||||| ||| || || |||| |||
Sbjct 936259 GTCC-TGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTG 936202
Query 43146 AT 43147
||
Sbjct 936201 AT 936200
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571817163989080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |