Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01- 27] 61 sequences; 20,750,089 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq57 111 2e-19 seq4 91.5 2e-13 seq59 87.8 2e-12 >seq57 Length=1280291 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||| | ||||| || | || || |||||||| || ||||| Sbjct 959634 CTCCTTCTGGATGTTGTAATCCGAAAGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAA 959693 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || | ||||||||||||| || | || |||||||||| ||| | || | |||| Sbjct 959694 GATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCC-TGAATCTTGGCCTTGACAT 959752 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| ||| || || |||| |||||||| ||||| || || ||||| | Sbjct 959753 TGTCGATCGTGTCCGACGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGA 959812 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 959813 CGAAGATCTGCAT 959825 Score = 93.3 bits (102), Expect = 5e-14 Identities = 118/157 (75%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||||||||| |||||||| || || || |||| || |||||||| || ||||| Sbjct 958717 TCCTTTTGAATGTTGTAATCTTGAAGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAG 958776 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || | ||||||||||||| ||| | || |||||||||| ||| | || | |||| ||| Sbjct 958777 ATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC-TGAATCTTGGCCTTGA-CGT 958834 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 | | | ||||||| ||| || || |||| ||||| Sbjct 958835 TGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGAT 958871 >seq4 Length=766227 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| |||| ||||| || |||| || |||||||| || || || Sbjct 226667 CTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 226726 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 226727 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 226785 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 | | | |||||| ||| || || |||| ||||| Sbjct 226786 TGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGAT 226822 >seq59 Length=937750 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || |||||||| | ||||| || |||| || |||||||| || ||||| Sbjct 936045 CTCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAA 935986 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 ||||| ||||||||||||| || | || |||||||||| ||| || Sbjct 935985 GATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTT 935938 Score = 84.2 bits (92), Expect = 3e-11 Identities = 131/182 (72%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||||| |||| || |||||| ||||| || || || || || ||| | Sbjct 936379 ACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTGAGCGTGCGCCC 936320 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || ||||| || | ||||||||||| | ||| | || |||||| Sbjct 936319 GTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTT 936260 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 43145 |||| ||| | || | |||| ||| | | | ||||||| ||| || || |||| ||| Sbjct 936259 GTCC-TGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTG 936202 Query 43146 AT 43147 || Sbjct 936201 AT 936200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817163989080