Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01- 27] 61 sequences; 20,750,089 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq11 315 6e-81 seq57 105 6e-18 seq59 98.7 9e-16 >seq11 Length=389204 Score = 315 bits (348), Expect = 6e-81 Identities = 515/740 (70%), Gaps = 4/740 (1%) Strand=Plus/Minus Query 23144 TCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCAC 23203 ||||||||||||||| | || |||||||||||||||| | ||||| ||| || ||| Sbjct 262222 TCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGATGGCGTACCAG 262163 Query 23204 ATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAAC 23263 | |||| ||| ||| ||| | | || || | ||| ||||| | | ||| | Sbjct 262162 AGCTTCTGGGCGGGAATGGTGCGCTTGGCGCGACCCTCCTTCTCATACTTCTCGAACAGC 262103 Query 23264 GCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATT--GCATCGGACACATGA 23321 | | || ||| | ||||| ||| |||||||| | | ||| || || | || Sbjct 262102 TCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCGGCA--GGGCAGAAGA 262045 Query 23322 GACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGT 23381 | ||| || | || || || ||| || || || || ||||| || || Sbjct 262044 GGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCAGAGGGCAA 261985 Query 23382 AGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGT 23441 |||||| ||||| ||||| |||||||| |||||| |||||| | || | || | Sbjct 261984 AGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACT 261925 Query 23442 CCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGC 23501 | || | ||| || ||||||||||||||||| | ||| ||||||||||| | ||| |||| Sbjct 261924 CGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGC 261865 Query 23502 CGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGT 23561 ||||||| |||||||| || || |||||||||||||| | ||||| || | || |||| Sbjct 261864 CGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGT 261805 Query 23562 TGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGA 23621 | || |||| ||| || | ||| || | || || | |||||| | || Sbjct 261804 TCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGTGGATCGAGA 261745 Query 23622 AACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGC 23681 ||| ||||| ||| ||| || || || | |||||| || || ||||||||||||| Sbjct 261744 GACCGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGATGC 261685 Query 23682 CCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCG 23741 ||||||| ||| || || ||| ||| | ||| ||||| || | |||| | |||| Sbjct 261684 CCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGGCG 261625 Query 23742 TAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGT 23801 | |||| ||| || ||||| ||||||||||||||| | | |||||| || |||| Sbjct 261624 TGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACCGCTCCGACATGAGGTTGT 261565 Query 23802 ACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCA 23861 |||| ||||| ||| |||||||| || ||||| || |||| ||||| ||||| | || Sbjct 261564 ACGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGACCGCGACACGCATGAGCA 261505 Query 23862 TGTATTGAGGTCTCTCGACC 23881 ||| || |||| |||| || Sbjct 261504 TGTGCTGCGGTCGCTCGGCC 261485 Score = 192 bits (212), Expect = 5e-44 Identities = 405/597 (68%), Gaps = 9/597 (2%) Strand=Plus/Minus Query 22099 GGCGGTCTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATA 22158 || || || ||| || || |||| |||||| |||| | ||| || || || || Sbjct 263417 GGTGGCCTGGTCGACGGTGAACTTGATGGCGCCGACGGCGGCGCGGGTACGGAGGTAGTA 263358 Query 22159 CATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTT-CCAT 22217 |||||||||||| |||||| ||||||| |||| || || |||||||| | | |||| Sbjct 263357 CATGCCCGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTGCGCCAT 263298 Query 22218 AACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGAT 22277 ||||| | | || || |||| |||||| ||| ||||| |||||||| || | Sbjct 263297 GG-TCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCTCCGCGGT 263239 Query 22278 CGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCC 22337 |||||| | | || | | ||| || ||||| || |||||||| | || Sbjct 263238 CGGCGGAGAGGTCGATGACGACCTTCTGCGAGATCTCCCACACCGTCTTGTAGATGCGCT 263179 Query 22338 TGATCTC-TAACGG-TATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAA 22395 ||| ||| | | || || || || |||||| || ||||| | |||||| Sbjct 263178 TGAGCTCATCAGGGATACCGGG--GACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGT 263121 Query 22396 ATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTT 22455 || || |||| |||||||||| ||| | || | || || || |||| Sbjct 263120 GTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTT 263061 Query 22456 CACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTC 22515 || ||||| |||||||||| | ||| ||||| ||| |||||||| ||| |||| || Sbjct 263060 GACGACTTGGAACTCGCCGGCGAGGACACGGCGGGTGTAGATGTTGGACGTGTACGGCTC 263001 Query 22516 GAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAG 22575 ||| | || ||| || || |||||| |||||| ||||||||||||||||| | | Sbjct 263000 GAACGCCTCGTTGAAGCCAAGGATCTGACTGGTCGACGCGGTCGGCATCGGCGCGCAGAC 262941 Query 22576 TAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAG 22635 |||||||| | | |||||||| | ||| || ||| | | | |||||||||||| Sbjct 262940 GAGCGAGTTGCGGATGCCGTGCTGCGCAATCTTCTCCTTCAACTCGGCCCAGTCCCACAG 262881 Query 22636 ATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGG 22692 || | |||||| || || ||||| ||||| ||||| | |||| | ||||| || Sbjct 262880 GTCCGTCGGCGTGAC---GTTCCACAGGTCGTACTGCAAGAGGCCGTGGCTCGCGGG 262827 >seq57 Length=1280291 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| || |||||| |||| ||||| |||| Sbjct 959826 CATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTC 959767 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| | || ||||||||| ||| | || |||||||| Sbjct 959766 GGACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCA 959707 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || ||||| || || ||| | || || | ||| | ||||| || Sbjct 959706 GCAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAA 959647 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || ||||| ||||| || || || Sbjct 959646 CATCCAGAAGGAGTCGACCCTTCACCTCGTGCT 959614 Score = 84.2 bits (92), Expect = 2e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 31228 GATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGA 31287 ||||||| |||| || || ||||||||| |||| | ||||| | || ||| Sbjct 958872 GATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGA 958813 Query 31288 CAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| ||| | ||||||||||||||||| | || ||||| || || ||| | || || Sbjct 958812 CAAGGAGGGCATCCCGCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTTGAGGA 958753 Query 31348 CTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 | || | ||||| ||||||||||| |||||||| || || || || Sbjct 958752 CGGACGCACGCTTCAAGATTACAACATTCAAAAGGAATCGACCCTGCACCTCGT 958699 >seq59 Length=937750 Score = 98.7 bits (108), Expect = 9e-16 Identities = 212/311 (68%), Gaps = 12/311 (4%) Strand=Plus/Minus Query 58077 AACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCT 58136 |||||| | || |||||||||||||||||||| || || ||||| ||||| | | ||| Sbjct 884675 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 884616 Query 58137 CACATTGTCAATAAACCG-ACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGC 58195 ||| | | || || | | | || || | ||| || ||||||||||| Sbjct 884615 CACCTCGAGCGCCGCCCTCACCCCGAAACGG-TCGAGCGCATCATTCGCGAGGCGGTCGA 884557 Query 58196 GATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGC---TCGGTATGAACAA 58252 |||||| | ||||| ||||||| || || || || || || |||| ||||||| Sbjct 884556 GATCGAGCAGGAGTTCCTCACCGAGGCGCTGCCCGT---CAAGCTTATCGGCATGAACAG 884500 Query 58253 TGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATT 58310 || | |||| ||||||| ||||| || || ||| || | | ||| ||| | Sbjct 884499 CGACCTCATGTGCCAGTACATCGAGTTCGTGGCAGACCGATTGCTTATCGCACTCGGCAA 884440 Query 58311 GGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAG 58370 |||| || ||| ||| | | || ||||| || |||||| | |||||||| | ||| Sbjct 884439 CGAGAAGATC--TACCACAAGGAGAACCCGTTCGACTTTATGGACATGATCTCGATGGAG 884382 Query 58371 GGCAAGACAAA 58381 |||||||| || Sbjct 884381 GGCAAGACCAA 884371 Score = 96.9 bits (106), Expect = 3e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 31228 GATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGA 31287 ||||||| |||| || || ||||||||| |||| | ||||| | || ||| Sbjct 936199 GATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGA 936258 Query 31288 CAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| ||| | ||||| ||||||||||| | || ||||| ||||| ||| | || || Sbjct 936259 CAAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGA 936318 Query 31348 CTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 | || | ||||| ||||||||||| || || ||||| || || ||||| ||| Sbjct 936319 CGGGCGCACGCTCAGCGACTATAACATTCAGAAGGAGTCGACGCTGCACCTGGTGCTT 936376 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/162 (72%), Gaps = 8/162 (5%) Strand=Plus/Minus Query 57915 AAGAAGGCAGAGTGGTCAATCAAATGGATA----AAAAGCGCCACGGCCACGTTCGCCGA 57970 |||||||| |||||| | ||| ||||| | ||||| || | |||| ||| Sbjct 884935 AAGAAGGCCGAGTGGGCGCTCACTTGGATCTCGGACGAGCGCTCCGTC----TTCGGCGA 884880 Query 57971 GAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAAT 58030 | | || ||||||||||||||||||| || || ||||| || ||| || ||| | || Sbjct 884879 GCGCCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCGTCCAT 884820 Query 58031 ATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTT 58072 || ||| | ||||| |||||| |||||||||| || || || Sbjct 884819 CTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACCTT 884778 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||||||||| ||| | ||||| ||||||||||| | || ||||| ||||| ||| | || Sbjct 937418 GGACAAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGA 937477 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || | ||||| ||||||||||| || || ||||| || || ||||| || Sbjct 937478 GGACGGGCGCACGCTCAGCGACTATAACATTCAGAAGGAGTCGACGCTGCACCTGGTGCT 937537 Query 31405 T 31405 | Sbjct 937538 T 937538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766060103120