Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01-
27] 61 sequences; 20,750,089 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq16 145 1e-30
seq1 132 8e-27
seq24 127 3e-25
>seq16
Length=277040
Score = 145 bits (160), Expect = 1e-30
Identities = 152/200 (76%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| || |||||||| || ||||||||||| || ||||| ||||| ||||| ||||||||
Sbjct 159980 CGTGACAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTCGCTCGCCGTGGTGGT 160039
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
||||||||| ||||||| | |||| || |||| |||| || | ||||||||||||
Sbjct 160040 GTCAAGCGTATCTCTGGCCTCATCTACGAGGAGACCCGTGGCGTCCTCAAGATCTTCCTC 160099
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| | | |||| || | | ||| ||||||||||| || || ||||| ||||||
Sbjct 160100 GAGAACATCATCCGCGACTCGGTTACCTACACCGAGCACGCCAAGCGCAAGACGGTCACC 160159
Query 16637 TCCATGGATATCGTCTATGC 16656
|| | || ||||||| ||
Sbjct 160160 TCGCTCGACGTCGTCTACGC 160179
>seq1
Length=1786154
Score = 132 bits (146), Expect = 8e-27
Identities = 151/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || |||||||| || ||||||||||| || ||||| ||||| ||||| || ||
Sbjct 788495 CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTCTCGCTCGCCGCGGC 788436
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| ||||||||| |||| || | |||| || |||| ||| | || | |||||||||
Sbjct 788435 GGTGTCAAGCGTATCTCGGGCCTCATCTACGAGGAGACTCGCGGCGTCCTCAAGATCTTC 788376
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
||| ||| | | |||| || | || || ||||||||||| || || ||||| |||
Sbjct 788375 CTCGAGAACATCATCCGCGACTCGGTCACGTACACCGAGCACGCCAAGCGCAAGACGGTC 788316
Query 16634 ACCTCCATGGATATCGTCTATGC 16656
||||| | || ||||||| ||
Sbjct 788315 ACCTCGCTCGACGTCGTCTACGC 788293
Score = 123 bits (136), Expect = 4e-24
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || |||||||| || ||||||||||| || ||||| ||||| ||||| || ||
Sbjct 771959 CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTCTCGCTCGCCGCGGC 772018
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| |||||||| |||| || | |||| || |||| ||| | || | |||||||||
Sbjct 772019 GGTGTCAAGCGCATCTCGGGCCTCATCTACGAGGAGACTCGCGGCGTCCTCAAGATCTTC 772078
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
||| ||| | | || | || | | || ||||||||||| || || ||||| |||
Sbjct 772079 CTCGAGAACATCATYCGCGACTCGGTYACSTACACCGAGCACGCCAAGCGCAAGACGGTC 772138
Query 16634 ACCTCCATGGATATCGTCTATGC 16656
||||| | || ||||||| ||
Sbjct 772139 ACCTCGCTCGACGTCGTCTACGC 772161
>seq24
Length=1461436
Score = 127 bits (140), Expect = 3e-25
Identities = 149/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || |||||||| || ||||||||||| || ||||| ||||| ||||| || ||
Sbjct 1306068 CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTCTCGCTCGCCGCGGC 1306009
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| |||||||| |||| || | |||| || |||| ||| | || | |||||||||
Sbjct 1306008 GGTGTCAAGCGYATCTCGGGCCTCATCTACGAGGAGACTCGCGGCGTCCTCAAGATCTTC 1305949
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
||| ||| | | || | || | || || ||||||||||| || || ||||| |||
Sbjct 1305948 CTCGAGAACATCATYCGCGACTCGGTCACGTACACCGAGCACGCCAAGCGCAAGACGGTC 1305889
Query 16634 ACCTCCATGGATATCGTCTATGC 16656
||||| | || ||||||| ||
Sbjct 1305888 ACCTCGCTCGACGTCGTCTACGC 1305866
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79075144227273
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |