Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01- 27] 61 sequences; 20,750,089 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq16 145 1e-30 seq1 132 8e-27 seq24 127 3e-25 >seq16 Length=277040 Score = 145 bits (160), Expect = 1e-30 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || |||||||| || ||||||||||| || ||||| ||||| ||||| |||||||| Sbjct 159980 CGTGACAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTCGCTCGCCGTGGTGGT 160039 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||||||| ||||||| | |||| || |||| |||| || | |||||||||||| Sbjct 160040 GTCAAGCGTATCTCTGGCCTCATCTACGAGGAGACCCGTGGCGTCCTCAAGATCTTCCTC 160099 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| | | |||| || | | ||| ||||||||||| || || ||||| |||||| Sbjct 160100 GAGAACATCATCCGCGACTCGGTTACCTACACCGAGCACGCCAAGCGCAAGACGGTCACC 160159 Query 16637 TCCATGGATATCGTCTATGC 16656 || | || ||||||| || Sbjct 160160 TCGCTCGACGTCGTCTACGC 160179 >seq1 Length=1786154 Score = 132 bits (146), Expect = 8e-27 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| ||||| ||||| || || Sbjct 788495 CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTCTCGCTCGCCGCGGC 788436 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || | |||| || |||| ||| | || | ||||||||| Sbjct 788435 GGTGTCAAGCGTATCTCGGGCCTCATCTACGAGGAGACTCGCGGCGTCCTCAAGATCTTC 788376 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| | | |||| || | || || ||||||||||| || || ||||| ||| Sbjct 788375 CTCGAGAACATCATCCGCGACTCGGTCACGTACACCGAGCACGCCAAGCGCAAGACGGTC 788316 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 ||||| | || ||||||| || Sbjct 788315 ACCTCGCTCGACGTCGTCTACGC 788293 Score = 123 bits (136), Expect = 4e-24 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| ||||| ||||| || || Sbjct 771959 CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTCTCGCTCGCCGCGGC 772018 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| |||| || | |||| || |||| ||| | || | ||||||||| Sbjct 772019 GGTGTCAAGCGCATCTCGGGCCTCATCTACGAGGAGACTCGCGGCGTCCTCAAGATCTTC 772078 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| | | || | || | | || ||||||||||| || || ||||| ||| Sbjct 772079 CTCGAGAACATCATYCGCGACTCGGTYACSTACACCGAGCACGCCAAGCGCAAGACGGTC 772138 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 ||||| | || ||||||| || Sbjct 772139 ACCTCGCTCGACGTCGTCTACGC 772161 >seq24 Length=1461436 Score = 127 bits (140), Expect = 3e-25 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| ||||| ||||| || || Sbjct 1306068 CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTCTCGCTCGCCGCGGC 1306009 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| |||| || | |||| || |||| ||| | || | ||||||||| Sbjct 1306008 GGTGTCAAGCGYATCTCGGGCCTCATCTACGAGGAGACTCGCGGCGTCCTCAAGATCTTC 1305949 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| | | || | || | || || ||||||||||| || || ||||| ||| Sbjct 1305948 CTCGAGAACATCATYCGCGACTCGGTCACGTACACCGAGCACGCCAAGCGCAAGACGGTC 1305889 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 ||||| | || ||||||| || Sbjct 1305888 ACCTCGCTCGACGTCGTCTACGC 1305866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075144227273