Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01- 27] 61 sequences; 20,750,089 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq57 129 6e-25 seq11 122 8e-23 seq59 120 3e-22 seq1 104 2e-17 seq4 89.7 5e-13 seq12 82.4 7e-11 >seq57 Length=1280291 Score = 129 bits (142), Expect = 6e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||| | ||||||||| | || | |||||||||||| || ||||||||||| Sbjct 959598 GCCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGA 959657 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || ||||| |||||||| || ||| |||| || ||||||||||| ||||| Sbjct 959658 AAGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 959717 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| || || ||||| | || | || || | ||||| | Sbjct 959718 GATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCAAC 959777 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | ||| || ||||| || || || ||||| ||||||||| Sbjct 959778 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 959826 Score = 109 bits (120), Expect = 5e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||||||||| | || || | || | |||||| |||||||||||||||||||| Sbjct 958681 CCACCGCGCAACCTCAAAACGAGGTGCAGGGTCGATTCCTTTTGAATGTTGTAATCTTGA 958740 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| |||||||| || ||| |||| || ||||||||||| || ||| Sbjct 958741 AGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGCGGG 958800 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | || |||| ||||||| Sbjct 958801 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACC 958860 Query 131188 TCGACGGT 131195 |||| ||| Sbjct 958861 TCGAGGGT 958868 >seq11 Length=389204 Score = 122 bits (134), Expect = 8e-23 Identities = 498/765 (65%), Gaps = 29/765 (4%) Strand=Plus/Minus Query 145736 CTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACG 145795 |||||| |||||||||||||||||| | || ||| ||||| ||||| | ||| | | Sbjct 262234 CTGTTGGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGG 262175 Query 145796 ATAAAACGGTGCA-AG-TCCTGCGCACGCACC-TGCTGCTGGTAGCGGCCCTCTTCTTCG 145852 || || || || | ||| || | | ||| ||| | ||| ||||| | || Sbjct 262174 ATGG--CGTACCAGAGCTTCTGGGCGGGAATGGTGC-GCTTGGCGCGACCCTCCTTCTCA 262118 Query 145853 TATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTG 145912 || ||| | | ||||||| ||| || |||||| ||| |||||||| || | Sbjct 262117 TACTTCTCGAACAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCG 262058 Query 145913 TTGGGACACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGC 145972 || || | || | ||| ||||||| | ||| |||||||| || | || || Sbjct 262057 GCAGGGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGA 261998 Query 145973 ACCCACAGCGCGTACATCAAGTCGCGCGCTTTGCAATCCTCAGCACCCATGTT-TCGCTT 146031 | ||| || || | | |||||||||||| | ||||| || ||| | || Sbjct 261997 ATCCAGAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGG 261938 Query 146032 CAAATTAAGCACACTATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCC 146091 | | || | | ||||||| ||||||||||| || | |||| ||||| || || Sbjct 261937 AGGTCGAGGAACTCGA-AGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCC 261879 Query 146092 TTTTCGTTTG---CCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCAT 146148 || ||| || |||||||| |||| || | ||||||| | ||||| | ||| Sbjct 261878 CGGGCGCTTGTTGCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCAT 261819 Query 146149 GGGCTCGACGCCGCTGGCTACGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCAC 146208 ||| || |||| | | ||||||||| | || | |||| | ||| | Sbjct 261818 GGGGATGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGAT 261759 Query 146209 GCAATGAACATTCACGCCGAGACCGCCG-CCGTACTTGGATAT-AGCGGCGCA-GTCGCC 146265 | || | | |||| |||||| |||| |||||| || |||| |||| ||| Sbjct 261758 GTTGTGGATCGAGAGACCGATGCCGCCGGCCGT-CTTGGAGATGAGCG-CGCACGTCTT- 261702 Query 146266 GAGCGTCTCGTAGATGCCGTCAATGCTATCG--CTTCGAATGCCGAGCAGAAAGCACGAG 146323 |||||| ||||||||||| || || ||| |||| || || || |||||||| Sbjct 261701 GAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTC--ATCGTGACGAGGAAGCACGAC 261644 Query 146324 CACATCTGCGCCATCGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATT 146383 | | ||||| |||||| || || ||| | |||||| ||||||||||| Sbjct 261643 GAGAGCTGCGGGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAA---- 261588 Query 146384 TTTCGGCT----CATCATCCGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAAT 146439 | | ||| ||| | ||||| ||||| ||| | |||||||||||| || || Sbjct 261587 GTACCGCTCCGACATGAGGTTGTACGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGAT 261528 Query 146440 GCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCTCCGCCAC 146484 ||| | ||||| |||||||||||||| || || ||||| ||||| Sbjct 261527 GCCGACCGCGACACGCATGAGCATGTGCTGCGGTCGCTCGGCCAC 261483 Score = 105 bits (116), Expect = 6e-18 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 |||||||| || ||||||||||| | ||||| || || | ||| |||||| | || Sbjct 263062 TTGACGACTTGGAACTCGCCGGCGAGGACACGGCGGGTGTAGATGTTGGACGTGTACGGC 263003 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || | |||||| ||| ||||| ||| ||||| ||||| ||||| ||| Sbjct 263002 TCGAACGCCTCGTTGAAGCCAAGGATCTGACTGGTCGACGCGGTCGGCATCGGCGCGCAG 262943 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || ||||| | |||||||| | || | ||||| | | |||| ||||| Sbjct 262942 ACGAGCGAGTTGCGGATGCCGTGCTGCGCAATCTTCTCCTTCAACTCGGCCCAGTCCCAC 262883 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGG 145293 || |||||| | |||| ||||| |||||||||||| | ||| | ||| ||||| Sbjct 262882 AGGTCCGTCGGCGTGACGTTCCACAGGTCGTACTGCAAGAGGCCGTGGCTCGCGGG 262827 >seq59 Length=937750 Score = 120 bits (132), Expect = 3e-22 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||| | ||| ||||| | || | ||||||||||| |||||||| || ||||| Sbjct 936391 GCCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCT 936332 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| |||||| ||||||||||| ||| |||| || ||||||||||| || || Sbjct 936331 GAGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGG 936272 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| || || ||||| | || | || |||| ||||||| Sbjct 936271 AATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGAC 936212 Query 131187 GTCGACGGT 131195 |||| ||| Sbjct 936211 CTCGAGGGT 936203 Score = 118 bits (130), Expect = 1e-21 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||| | ||| ||||| | || | ||||||||||| |||||||| || ||||| Sbjct 937553 GCCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCT 937494 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| |||||| ||||||||||| ||| |||| || ||||||||||| || || Sbjct 937493 GAGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGG 937434 Query 131127 GATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 937433 AATGCCCTCCTTGTC 937419 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||||||||| | || | ||||||||| || || ||||||||||| Sbjct 936080 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 936021 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| |||||||| || ||| |||| | |||||||||||| |||||| Sbjct 936020 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGG 935961 Query 131128 ATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 935960 ATGCCCTCCTTGTC 935947 >seq1 Length=1786154 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| || || | || | |||||||||||| || |||||||| || Sbjct 480088 CCACCGCGAAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 480029 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| || ||||||||||| || ||| Sbjct 480028 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 479969 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162 || || || ||||| ||| || ||||| ||| Sbjct 479968 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACCTG 479934 >seq4 Length=766227 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 |||||||||||| ||||||||||| || | ||||| |||||| ||||||||||| Sbjct 226661 GGTCGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 226720 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 || |||| | ||||||||||| || ||||| || || ||||| ||| || ||| Sbjct 226721 GGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 226780 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGT 131195 || | || | || || | ||||||| |||| ||| Sbjct 226781 GACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGT 226819 >seq12 Length=324675 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||| | |||| || | ||| | |||||| ||| |||||| ||||| || Sbjct 137511 GCCGCCGCGTAGGCGCAAGACGAGATGAAGGGTCGAATCCCTTTGAACCTTGTAGTCTTC 137452 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| |||||| |||||||| || ||| | || | ||||||||||| ||||| Sbjct 137451 GAGCGTGCGGCTGTCCTCGAGCTGCTTCCCCGCGAACATGAGCCGCTGCTGGTCGGGAGG 137392 Query 131127 GATTCCTTCTTTGTC 131141 ||| || || ||||| Sbjct 137391 GATGCCCTCCTTGTC 137377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012440090240