Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01-
27] 61 sequences; 20,750,089 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq24 120 6e-22
seq35 114 3e-20
seq9 114 3e-20
seq6 114 3e-20
seq1 114 3e-20
seq13 109 1e-18
seq2 98.7 2e-15
seq46 96.9 7e-15
seq11 93.3 9e-14
seq15 86.0 1e-11
>seq24
Length=1461436
Score = 120 bits (132), Expect = 6e-22
Identities = 86/97 (89%), Gaps = 3/97 (3%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 1319844 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 1319903
Query 142563 CCCCACATCGGGCAGAAGTCGCCGTCTTTTGATGGCG 142599
|||||||| |||| || |||| | ||||| |||||
Sbjct 1319904 CCCCACATTGGGC-GACTTCGC--TTTTTTGCTGGCG 1319937
Score = 114 bits (126), Expect = 3e-20
Identities = 80/90 (89%), Gaps = 2/90 (2%)
Strand=Plus/Plus
Query 142488 ACCGGGTGGTGAG--ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTA 142545
||||| |||| | | |||||||||||||||||||||||||| | |||||||||||||
Sbjct 1300201 ACCGGCTGGTCAAGCACAGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTG 1300260
Query 142546 GTGGTCGTGGGTTCGAGCCCCACATCGGGC 142575
||||||||||||||||||||||||| ||||
Sbjct 1300261 GTGGTCGTGGGTTCGAGCCCCACATTGGGC 1300290
Score = 114 bits (126), Expect = 3e-20
Identities = 80/90 (89%), Gaps = 2/90 (2%)
Strand=Plus/Minus
Query 142488 ACCGGGTGGTGAG--ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTA 142545
||||| |||| | | |||||||||||||||||||||||||| | |||||||||||||
Sbjct 1306830 ACCGGCTGGTCAAGCACAGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTG 1306771
Query 142546 GTGGTCGTGGGTTCGAGCCCCACATCGGGC 142575
||||||||||||||||||||||||| ||||
Sbjct 1306770 GTGGTCGTGGGTTCGAGCCCCACATTGGGC 1306741
>seq35
Length=1438278
Score = 114 bits (126), Expect = 3e-20
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 1310627 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 1310568
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 1310567 CCCCACATTGGGC 1310555
>seq9
Length=584576
Score = 114 bits (126), Expect = 3e-20
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 493992 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 494051
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 494052 CCCCACATTGGGC 494064
>seq6
Length=733724
Score = 114 bits (126), Expect = 3e-20
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 517578 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 517519
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 517518 CCCCACATTGGGC 517506
>seq1
Length=1786154
Score = 114 bits (126), Expect = 3e-20
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 776375 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 776434
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 776435 CCCCACATTGGGC 776447
Score = 114 bits (126), Expect = 3e-20
Identities = 85/97 (88%), Gaps = 3/97 (3%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||
Sbjct 790611 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 790552
Query 142564 CCCACATCGGGCAGAAGTCGCCGTCTTTTGATGGCGC 142600
||||||| |||| || |||| | ||||| || |||
Sbjct 790551 CCCACATTGGGC-GACTTCGC--TTTTTTGCTGTCGC 790518
>seq13
Length=1522988
Score = 109 bits (120), Expect = 1e-18
Identities = 156/217 (72%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCG- 279757
||||| || ||||| ||||||||||||||||| || ||| | |||||||| || || ||
Sbjct 1444361 GGTTCGCTCTCGGGCGGTTGGAAGATGAAGCTCGCGCTCGCCCGCGCCATCCT-CTTCGA 1444419
Query 279758 TGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTG 279817
||||| |||| || || || ||||| ||||||||| ||||| |||||| |||||
Sbjct 1444420 GGCCGACATCCTCCTCCTCGACGAGCCGACCAACCACTTGGACGTGCTCAACGTCGCCTG 1444479
Query 279818 GCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTC 279877
||| | | |||||| | || |||| | | || |||| ||||| ||||||
Sbjct 1444480 GCTCGAGAACTACCTCTGCTCGCTCAAGACTTGCACCTCGATCATCGTCTCGCACGACAG 1444539
Query 279878 TGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCAC 279914
|||||||| | ||| ||| | | |||| | |||
Sbjct 1444540 CGGCTTCCTCAACAACGTCTGCACCGACATCCTCCAC 1444576
Score = 95.1 bits (104), Expect = 2e-14
Identities = 128/176 (73%), Gaps = 3/176 (2%)
Strand=Plus/Plus
Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232
||| | ||||| || ||| | || ||||| || || |||| |||| | |||||||
Sbjct 1444926 GTCCTCGGACCGAACGGTTCCGGCAAGTCGACGCTCGTCAAGCTCCTCGTCGCCGAGACC 1444985
Query 280233 CAGGCCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289
|| ||| |||| || | | |||||||| |||||| || || | ||||||||
Sbjct 1444986 GAGCCCAACAAGGGCGGTGAGGTCTGGAAGCACCCCAACTTGGTCATCGGCTACGTCGCC 1445045
Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACAT 280345
|||||||| |||||||||||||| ||||||| |||| ||| || ||| |||||
Sbjct 1445046 CAGCACGCCTTCCACCACATCGACCACCACCTCGACAAGACCCCGCTCCAGTACAT 1445101
Score = 93.3 bits (102), Expect = 9e-14
Identities = 154/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
|| ||||| ||||| |||| ||||||||||| || || | ||||| || || |||
Sbjct 1444013 GGCGAGGACCTGTGCAACTGCACGTTCTCGCTCGCGTACGGCGCCAAGATCCTCCTCAAC 1444072
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
| || |||| | |||||||||| |||| || |||||| || | ||| ||| ||
Sbjct 1444073 ACGGCCACCCTCCGCCTCAAGCGTGGACACCGCTACGGTCTCTGTGGACGCAACGGATCG 1444132
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATT-TCCTAACGC 279523
|| ||| || || |||||||| || | ||||||||| | || || || ||| | |
Sbjct 1444133 GGCAAGTCGACCCTCATGCGCGCGATCGACAACGGTCAGGTCGAGGGCTTCCCCTCGCCC 1444192
Query 279524 ATCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGAC 279563
| ||||| | || | || || ||||||||| |||||
Sbjct 1444193 GAC-GAGGTCCGCACGTTCTACGTCGAGCACGACGTCGAC 1444231
>seq2
Length=1701455
Score = 98.7 bits (108), Expect = 2e-15
Identities = 148/207 (71%), Gaps = 4/207 (2%)
Strand=Plus/Minus
Query 217837 TGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGCC 217896
||||| ||||||||||| ||||||||||| || |||| || | | ||||| |||
Sbjct 1666121 TGCACGCTCATCCTGACCGAGGGAGACTCGGCCAAGGCGCTCGCCGTCTCGGGTCTCGCC 1666062
Query 217897 GTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGC 217956
|| || ||||| || | || ||| ||||||| ||||| || ||||| |||||||| |||
Sbjct 1666061 GTCGTCGGTCGCGACAACTACGGTGTCTTCCCGCTCCGCGGAAAGCTCCTCAACGTTCGC 1666002
Query 217957 GATGCCTCGGTTTCAA-GCATTGCT-GCAAATGCAGAGATTGCCGCCATCAAGCAAATCC 218014
|| || | | ||| || | || | || || ||||| || |||||||| |||
Sbjct 1666001 GAGGCAACCG--GCAAGGCGCTTCTCGAGAACGCCGAGATCCAGGCGATCAAGCAGATCA 1665944
Query 218015 TGGGTCTTCAGGTTGGAAAGACTTACA 218041
|||| | ||| || ||||| ||||
Sbjct 1665943 TGGGCTTGCAGCAGGGCAAGACGTACA 1665917
>seq46
Length=1295308
Score = 96.9 bits (106), Expect = 7e-15
Identities = 111/147 (76%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238
|| || || || ||||| ||||| ||| | ||||| | ||||||||||||| | ||
Sbjct 170954 GGCCCGAACGGCGCGGGCAAGTCGACCTTGATCAAGTTGTTGACTGGCGAGACGCTCCCC 170895
Query 280239 -ACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGC 280297
||| ||| ||| |||||| || ||| | || || ||||||||||| ||||||||
Sbjct 170894 GACTC-GGGACGCGTCGAGAAGCACCCGAACCTCCGTATCGCTTACGTCGCCCAGCACGC 170836
Query 280298 TTTCCACCACATCGAGAACCACCTGGA 280324
||||||||||||||| | ||||| ||
Sbjct 170835 CTTCCACCACATCGAGCAGCACCTCGA 170809
>seq11
Length=389204
Score = 93.3 bits (102), Expect = 9e-14
Identities = 228/343 (66%), Gaps = 2/343 (1%)
Strand=Plus/Minus
Query 293032 GTTTTAAGACCCTTCTTCCATGCGTAGAACAGCATAGATGTCATAGACTTCAGTGTGGGA 293091
|| || |||||||||||||| ||||||| |||| || || | | || || ||
Sbjct 263350 GTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTGCGCCATGGTCGGC 263291
Query 293092 GTGGCCAGGAAAAGGTTCATGCTCTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCG 293151
| | ||| | ||| | ||||| ||| |||| || || || || || || | |
Sbjct 263290 GACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCTCCGCGGTCGGCGGAG 263231
Query 293152 AGGTCAATCACTGTCTTCATAGAGATCTCCCACGATGTCTTGTACACTGC-CTTGACATC 293210
||||| || || |||| |||||||||||| |||||||| | ||| ||||| ||
Sbjct 263230 AGGTCGATGACGACCTTCTGCGAGATCTCCCACACCGTCTTGTAGA-TGCGCTTGAGCTC 263172
Query 293211 AGGATGAATGCCAATAACCTTCTGGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCAT 293270
| | | || || || |||||||| || || || || || ||| |||||||||
Sbjct 263171 ATCAGGGATACCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGTGTTCTTCAT 263112
Query 293271 TGTCTCGGACCAAGTCCCACGAGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGG 293330
| ||| ||| || || | | ||| ||||||| || | | |||||| || |
Sbjct 263111 CGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTTGACGACTTG 263052
Query 293331 GAACTCACCAGCGAGAGTGCGACGGCTGTAAATGTTCGAAGTG 293373
|||||| || ||||| || ||| |||| ||||| || |||
Sbjct 263051 GAACTCGCCGGCGAGGACACGGCGGGTGTAGATGTTGGACGTG 263009
>seq15
Length=278969
Score = 86.0 bits (94), Expect = 1e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 251577 CTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTT 251636
||||||||||| ||||| | |||||| |||||||| ||||| |||||||||| ||||
Sbjct 244707 CTTGCCCTCCATCGAGATCATCTCCATAAAGTCGAACGGGTTCTCGGCATTGTACAGCTT 244648
Query 251637 GGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAG 251696
| | || || || || | | ||||| || || ||||| | ||||||| ||| ||
Sbjct 244647 GTCGTTCCCGAGCGCGACAAGCAATCGGTCCGCGACGAACTCGATGTACTGTCGCATGAG 244588
Query 251697 TTCAGAGTTCATGCCAATCA 251716
| ||||||||| ||||
Sbjct 244587 GGTGGCGTTCATGCCGATCA 244568
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027835996681301
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