Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01- 27] 61 sequences; 20,750,089 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq24 120 6e-22 seq35 114 3e-20 seq9 114 3e-20 seq6 114 3e-20 seq1 114 3e-20 seq13 109 1e-18 seq2 98.7 2e-15 seq46 96.9 7e-15 seq11 93.3 9e-14 seq15 86.0 1e-11 >seq24 Length=1461436 Score = 120 bits (132), Expect = 6e-22 Identities = 86/97 (89%), Gaps = 3/97 (3%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 1319844 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 1319903 Query 142563 CCCCACATCGGGCAGAAGTCGCCGTCTTTTGATGGCG 142599 |||||||| |||| || |||| | ||||| ||||| Sbjct 1319904 CCCCACATTGGGC-GACTTCGC--TTTTTTGCTGGCG 1319937 Score = 114 bits (126), Expect = 3e-20 Identities = 80/90 (89%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 142488 ACCGGGTGGTGAG--ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTA 142545 ||||| |||| | | |||||||||||||||||||||||||| | ||||||||||||| Sbjct 1300201 ACCGGCTGGTCAAGCACAGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTG 1300260 Query 142546 GTGGTCGTGGGTTCGAGCCCCACATCGGGC 142575 ||||||||||||||||||||||||| |||| Sbjct 1300261 GTGGTCGTGGGTTCGAGCCCCACATTGGGC 1300290 Score = 114 bits (126), Expect = 3e-20 Identities = 80/90 (89%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 142488 ACCGGGTGGTGAG--ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTA 142545 ||||| |||| | | |||||||||||||||||||||||||| | ||||||||||||| Sbjct 1306830 ACCGGCTGGTCAAGCACAGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTG 1306771 Query 142546 GTGGTCGTGGGTTCGAGCCCCACATCGGGC 142575 ||||||||||||||||||||||||| |||| Sbjct 1306770 GTGGTCGTGGGTTCGAGCCCCACATTGGGC 1306741 >seq35 Length=1438278 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 1310627 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 1310568 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 1310567 CCCCACATTGGGC 1310555 >seq9 Length=584576 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 493992 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 494051 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 494052 CCCCACATTGGGC 494064 >seq6 Length=733724 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 517578 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 517519 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 517518 CCCCACATTGGGC 517506 >seq1 Length=1786154 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 776375 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 776434 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 776435 CCCCACATTGGGC 776447 Score = 114 bits (126), Expect = 3e-20 Identities = 85/97 (88%), Gaps = 3/97 (3%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||| Sbjct 790611 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 790552 Query 142564 CCCACATCGGGCAGAAGTCGCCGTCTTTTGATGGCGC 142600 ||||||| |||| || |||| | ||||| || ||| Sbjct 790551 CCCACATTGGGC-GACTTCGC--TTTTTTGCTGTCGC 790518 >seq13 Length=1522988 Score = 109 bits (120), Expect = 1e-18 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCG- 279757 ||||| || ||||| ||||||||||||||||| || ||| | |||||||| || || || Sbjct 1444361 GGTTCGCTCTCGGGCGGTTGGAAGATGAAGCTCGCGCTCGCCCGCGCCATCCT-CTTCGA 1444419 Query 279758 TGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTG 279817 ||||| |||| || || || ||||| ||||||||| ||||| |||||| ||||| Sbjct 1444420 GGCCGACATCCTCCTCCTCGACGAGCCGACCAACCACTTGGACGTGCTCAACGTCGCCTG 1444479 Query 279818 GCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTC 279877 ||| | | |||||| | || |||| | | || |||| ||||| |||||| Sbjct 1444480 GCTCGAGAACTACCTCTGCTCGCTCAAGACTTGCACCTCGATCATCGTCTCGCACGACAG 1444539 Query 279878 TGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCAC 279914 |||||||| | ||| ||| | | |||| | ||| Sbjct 1444540 CGGCTTCCTCAACAACGTCTGCACCGACATCCTCCAC 1444576 Score = 95.1 bits (104), Expect = 2e-14 Identities = 128/176 (73%), Gaps = 3/176 (2%) Strand=Plus/Plus Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232 ||| | ||||| || ||| | || ||||| || || |||| |||| | ||||||| Sbjct 1444926 GTCCTCGGACCGAACGGTTCCGGCAAGTCGACGCTCGTCAAGCTCCTCGTCGCCGAGACC 1444985 Query 280233 CAGGCCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 || ||| |||| || | | |||||||| |||||| || || | |||||||| Sbjct 1444986 GAGCCCAACAAGGGCGGTGAGGTCTGGAAGCACCCCAACTTGGTCATCGGCTACGTCGCC 1445045 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACAT 280345 |||||||| |||||||||||||| ||||||| |||| ||| || ||| ||||| Sbjct 1445046 CAGCACGCCTTCCACCACATCGACCACCACCTCGACAAGACCCCGCTCCAGTACAT 1445101 Score = 93.3 bits (102), Expect = 9e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || ||||| ||||| |||| ||||||||||| || || | ||||| || || ||| Sbjct 1444013 GGCGAGGACCTGTGCAACTGCACGTTCTCGCTCGCGTACGGCGCCAAGATCCTCCTCAAC 1444072 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 | || |||| | |||||||||| |||| || |||||| || | ||| ||| || Sbjct 1444073 ACGGCCACCCTCCGCCTCAAGCGTGGACACCGCTACGGTCTCTGTGGACGCAACGGATCG 1444132 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATT-TCCTAACGC 279523 || ||| || || |||||||| || | ||||||||| | || || || ||| | | Sbjct 1444133 GGCAAGTCGACCCTCATGCGCGCGATCGACAACGGTCAGGTCGAGGGCTTCCCCTCGCCC 1444192 Query 279524 ATCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGAC 279563 | ||||| | || | || || ||||||||| ||||| Sbjct 1444193 GAC-GAGGTCCGCACGTTCTACGTCGAGCACGACGTCGAC 1444231 >seq2 Length=1701455 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 217837 TGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGCC 217896 ||||| ||||||||||| ||||||||||| || |||| || | | ||||| ||| Sbjct 1666121 TGCACGCTCATCCTGACCGAGGGAGACTCGGCCAAGGCGCTCGCCGTCTCGGGTCTCGCC 1666062 Query 217897 GTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGC 217956 || || ||||| || | || ||| ||||||| ||||| || ||||| |||||||| ||| Sbjct 1666061 GTCGTCGGTCGCGACAACTACGGTGTCTTCCCGCTCCGCGGAAAGCTCCTCAACGTTCGC 1666002 Query 217957 GATGCCTCGGTTTCAA-GCATTGCT-GCAAATGCAGAGATTGCCGCCATCAAGCAAATCC 218014 || || | | ||| || | || | || || ||||| || |||||||| ||| Sbjct 1666001 GAGGCAACCG--GCAAGGCGCTTCTCGAGAACGCCGAGATCCAGGCGATCAAGCAGATCA 1665944 Query 218015 TGGGTCTTCAGGTTGGAAAGACTTACA 218041 |||| | ||| || ||||| |||| Sbjct 1665943 TGGGCTTGCAGCAGGGCAAGACGTACA 1665917 >seq46 Length=1295308 Score = 96.9 bits (106), Expect = 7e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 || || || || ||||| ||||| ||| | ||||| | ||||||||||||| | || Sbjct 170954 GGCCCGAACGGCGCGGGCAAGTCGACCTTGATCAAGTTGTTGACTGGCGAGACGCTCCCC 170895 Query 280239 -ACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGC 280297 ||| ||| ||| |||||| || ||| | || || ||||||||||| |||||||| Sbjct 170894 GACTC-GGGACGCGTCGAGAAGCACCCGAACCTCCGTATCGCTTACGTCGCCCAGCACGC 170836 Query 280298 TTTCCACCACATCGAGAACCACCTGGA 280324 ||||||||||||||| | ||||| || Sbjct 170835 CTTCCACCACATCGAGCAGCACCTCGA 170809 >seq11 Length=389204 Score = 93.3 bits (102), Expect = 9e-14 Identities = 228/343 (66%), Gaps = 2/343 (1%) Strand=Plus/Minus Query 293032 GTTTTAAGACCCTTCTTCCATGCGTAGAACAGCATAGATGTCATAGACTTCAGTGTGGGA 293091 || || |||||||||||||| ||||||| |||| || || | | || || || Sbjct 263350 GTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTGCGCCATGGTCGGC 263291 Query 293092 GTGGCCAGGAAAAGGTTCATGCTCTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCG 293151 | | ||| | ||| | ||||| ||| |||| || || || || || || | | Sbjct 263290 GACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCTCCGCGGTCGGCGGAG 263231 Query 293152 AGGTCAATCACTGTCTTCATAGAGATCTCCCACGATGTCTTGTACACTGC-CTTGACATC 293210 ||||| || || |||| |||||||||||| |||||||| | ||| ||||| || Sbjct 263230 AGGTCGATGACGACCTTCTGCGAGATCTCCCACACCGTCTTGTAGA-TGCGCTTGAGCTC 263172 Query 293211 AGGATGAATGCCAATAACCTTCTGGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCAT 293270 | | | || || || |||||||| || || || || || ||| ||||||||| Sbjct 263171 ATCAGGGATACCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGTGTTCTTCAT 263112 Query 293271 TGTCTCGGACCAAGTCCCACGAGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGG 293330 | ||| ||| || || | | ||| ||||||| || | | |||||| || | Sbjct 263111 CGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTTGACGACTTG 263052 Query 293331 GAACTCACCAGCGAGAGTGCGACGGCTGTAAATGTTCGAAGTG 293373 |||||| || ||||| || ||| |||| ||||| || ||| Sbjct 263051 GAACTCGCCGGCGAGGACACGGCGGGTGTAGATGTTGGACGTG 263009 >seq15 Length=278969 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 251577 CTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTT 251636 ||||||||||| ||||| | |||||| |||||||| ||||| |||||||||| |||| Sbjct 244707 CTTGCCCTCCATCGAGATCATCTCCATAAAGTCGAACGGGTTCTCGGCATTGTACAGCTT 244648 Query 251637 GGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAG 251696 | | || || || || | | ||||| || || ||||| | ||||||| ||| || Sbjct 244647 GTCGTTCCCGAGCGCGACAAGCAATCGGTCCGCGACGAACTCGATGTACTGTCGCATGAG 244588 Query 251697 TTCAGAGTTCATGCCAATCA 251716 | ||||||||| |||| Sbjct 244587 GGTGGCGTTCATGCCGATCA 244568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027835996681301