Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01- 27] 61 sequences; 20,750,089 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq57 179 7e-40 seq11 145 1e-29 seq59 127 4e-24 seq13 122 2e-22 seq35 98.7 2e-15 seq24 98.7 2e-15 seq9 98.7 2e-15 seq6 98.7 2e-15 seq1 98.7 2e-15 seq15 96.9 6e-15 >seq57 Length=1280291 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 |||||||| || |||| || | ||| || || ||||| || |||||||| ||||| || Sbjct 959599 CCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAA 959658 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||||||||| ||||| || | | || |||||||| || Sbjct 959659 AGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 959718 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| |||||||| ||||| ||||| | || || || Sbjct 959719 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCAACC 959778 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || ||||||||||||||||| |||||||| Sbjct 959779 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 959825 >seq11 Length=389204 Score = 145 bits (160), Expect = 1e-29 Identities = 283/418 (68%), Gaps = 0/418 (0%) Strand=Plus/Minus Query 30824 GTAATACATAAGCGTCTTGAGACCCTTCTTCCATGCATAGAACAGCATGGAAGACATTGA 30883 ||| ||||| ||||||||||||||||||||| | ||||| |||| || | | Sbjct 263363 GTAGTACATGCCCGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTG 263304 Query 30884 CTTCATAGAGGGCGCTGCAACGAAGAGGTTCATGCTCTGTGTCTGGTCAACAAACGGACC 30943 | ||| | |||| | | | || ||| | ||| | |||||| | |||| || Sbjct 263303 CGCCATGGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCTCC 263244 Query 30944 GCGGTCTGCTGCAAGGTCAATGACGGTCTTCATAGACAGCTCCCATGCGGTCTTGTAGAT 31003 |||||| || | ||||| |||||| |||| || | |||||| | ||||||||||| Sbjct 263243 GCGGTCGGCGGAGAGGTCGATGACGACCTTCTGCGAGATCTCCCACACCGTCTTGTAGAT 263184 Query 31004 TGCCTTGAGCTCAGGGTGGATGCCAATGACACGTTGGATGGACCCCCCGTTGGCAATAAT 31063 |||||||||| |||| || ||| ||||| || || || || || || Sbjct 263183 GCGCTTGAGCTCATCAGGGATACCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGAT 263124 Query 31064 CTGGTTCTTCATGGCCTCGGACCACGTGCCACGAGCGATGAGGTCGCGCACGAGGTAGTT 31123 | ||||||||| || ||| |||| ||| || ||| ||||||||| | ||| || Sbjct 263123 CGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGG 263064 Query 31124 GTTGACCACAGGGAACTCTCCAGCAAGGGTCCGGCGGCTGTACAGATTAGAAGTGATCGG 31183 |||||| || ||||||| || || ||| |||||| |||| | || || ||| ||| Sbjct 263063 GTTGACGACTTGGAACTCGCCGGCGAGGACACGGCGGGTGTAGATGTTGGACGTGTACGG 263004 Query 31184 CTCCATAGCCTCTACGGACCCGCAGATTTGCGCGGTGGATGCGGTGGGCATCAGCGCG 31241 ||| | ||||| | | || ||| || ||| || ||||| |||||| ||||| Sbjct 263003 CTCGAACGCCTCGTTGAAGCCAAGGATCTGACTGGTCGACGCGGTCGGCATCGGCGCG 262946 >seq59 Length=937750 Score = 127 bits (140), Expect = 4e-24 Identities = 136/180 (76%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | |||| ||| ||||| ||||| || || |||||||| ||| | Sbjct 937552 CCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTG 937493 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||| || || | |||||| |||||||| || | | || ||||| || ||| Sbjct 937492 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 937433 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| ||||||||| ||||||||||| | || || ||| Sbjct 937432 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGACTCGACT 937373 Score = 86.0 bits (94), Expect = 1e-11 Identities = 204/306 (67%), Gaps = 2/306 (1%) Strand=Plus/Plus Query 9981 TTGGACTTGCCCTCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAAC 10040 |||| ||||||||| | || || | ||||| ||||| || |||||||| | | Sbjct 884371 TTGGTCTTGCCCTCCATCGAGATCATGTCCATAAAGTCGAACGGGTTCTCCTTGTGGTAG 884430 Query 10041 TGCTTGGGGTAACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTC 10100 ||| || |||||||| | | | ||||| |||||||||||||||||||||| | Sbjct 884431 ATCTTCTCGTTGCCGAGTGCGATAAGCAATCGGTCTGCCACGAACTCGATGTACTGGCAC 884490 Query 10101 ATCAGGTCCGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTT 10160 || ||||| ||||||||| || | | ||| | || ||| | ||| |||| Sbjct 884491 ATGAGGTCGCTGTTCATGCCGATAAGCTTGACGGGCAGCGCCTCGGTGAGGAACTCCTGC 884550 Query 10161 TCGTTGGCGACCGCTTCCTCGACGATGCTCTTTACCACGTCAAGG-GACAGCTTGTTCTC 10219 ||| | ||||||| || | ||||| || ||| || || || || | ||| Sbjct 884551 TCGATCTCGACCGCCTCGCGAATGATGCGCTCGACCGTTTCGGGGTGAGGGC-GGCGCTC 884609 Query 10220 GAGCTTCGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAA 10279 ||| | ||| | ||||| |||| | |||||| ||||||||||| ||||| Sbjct 884610 GAGGTGCGAGAAGAGGAGGCAGGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAGATGAG 884669 Query 10280 CTCGTT 10285 |||||| Sbjct 884670 CTCGTT 884675 >seq13 Length=1522988 Score = 122 bits (134), Expect = 2e-22 Identities = 329/495 (66%), Gaps = 30/495 (6%) Strand=Plus/Minus Query 225514 GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTC 225573 |||||| || |||||| ||||||| |||||| || || ||||| || || |||||||| Sbjct 1444483 GAGCCAGGCGACGTTGAGCACGTCCAAGTGGTTGGTCGGCTCGTCGAGGAGGAGGATGTC 1444424 Query 225574 AGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGA 225633 || || | |||||||||||| | ||| | |||||||| ||||| || || || || || Sbjct 1444423 GGCCTCGAAGAGGATGGCGCGGGCGAGCGCGAGCTTCATCTTCCAACCGCCCGAGAGCGA 1444364 Query 225634 GCCGATTGAAACAGAGTGCTTAGCTTCGTCA---AAGCCGT---ACTCCAGGAGCGTCTG 225687 ||||| | | | | || ||| |||||| |||| |||| ||| Sbjct 1444363 ACCGATGG---CGGCCTCCTGGCGCTCGCGGGTGAAGCCGACCGACTCGAGGA-CGTTGC 1444308 Query 225688 GATAATG-----CGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGGTAA 225742 | | | || || ||| | |||| | | ||| || || |||||| | Sbjct 1444307 GGCACTCGTCCTCGTTCTTGAG-GATGCGCTTGTCC---TTGAGGACGAACGAGATG--- 1444255 Query 225743 TCATATACGGTCATGTCCGAGACAGACGC-GTCAATGTCGTGGTCCACGTACACCGTCCG 225801 || || | ||||| | | ||| ||| | |||||| || ||||| | ||| || Sbjct 1444254 ----ATCGAGT--TCTCCGACTC-GTCGCCGTCGACGTCGTGCTCGACGTAGAACGTGCG 1444202 Query 225802 GAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGT 225861 || || | |||||||||||| | ||| || || | ||||| || | ||||| Sbjct 1444201 GACCTCGTCGGGCGAGGGGAAGCCCTCGACCTGACCGTTGTCGATCGCGCGCATGAGGGT 1444142 Query 225862 ACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAG 225921 |||||||| |||||| | || ||| ||||| | | || ||||||| | ||| Sbjct 1444141 CGACTTGCCCGATCCGTTGCGTCCACAGAGACCGTAGCGGTGTCCACGCTTGAGGCGGAG 1444082 Query 225922 GCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAG 225981 | | | ||| |||||||||||| | || || || || |||||| ||| | |||||| Sbjct 1444081 GGTGGCCGTGTTGAGGAGGATCTTGGCGCCGTACGCGAGCGAGAACGTGCAGTTGCACAG 1444022 Query 225982 GTCCTCACCCTCCTC 225996 |||||| |||||||| Sbjct 1444021 GTCCTCGCCCTCCTC 1444007 >seq35 Length=1438278 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 1310626 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 1310567 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 1310566 CCCACATTGGGC 1310555 >seq24 Length=1461436 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 1300219 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 1300278 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 1300279 CCCACATTGGGC 1300290 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 1306812 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 1306753 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 1306752 CCCACATTGGGC 1306741 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 1319845 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 1319904 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 1319905 CCCACATTGGGC 1319916 >seq9 Length=584576 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 493993 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 494052 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 494053 CCCACATTGGGC 494064 >seq6 Length=733724 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 517577 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 517518 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 517517 CCCACATTGGGC 517506 >seq1 Length=1786154 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 776376 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 776435 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 776436 CCCACATTGGGC 776447 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 790611 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 790552 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 790551 CCCACATTGGGC 790540 >seq15 Length=278969 Score = 96.9 bits (106), Expect = 6e-15 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 9981 TTGGACTTGCCCTCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAAC 10040 |||| ||||||||| | || || | |||||| ||||| || ||||||||||| || Sbjct 244712 TTGGTCTTGCCCTCCATCGAGATCATCTCCATAAAGTCGAACGGGTTCTCGGCATTGTAC 244653 Query 10041 TGCTTGGGGTAACCGAGTGCTGTGAA--AATGCGGTCAGCCACGAACTCGATGTACTGGC 10098 ||||| || ||||| || | || ||| ||||| || ||||||||||||||||| | Sbjct 244652 AGCTTGTCGTTCCCGAGCGC-GACAAGCAAT-CGGTCCGCGACGAACTCGATGTACTGTC 244595 Query 10099 TCATCAGGTCCGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCT 10158 ||| ||| | ||||||||| |||| || | ||| | |||||| | ||| || | Sbjct 244594 GCATGAGGGTGGCGTTCATGCCGATCAAGCCGACGGGCAAGGCGTCCGTCAGGAATTCTT 244535 Query 10159 TTTCGTTGGCGACCGCTTC 10177 ||| | |||| ||||| Sbjct 244534 GCTCGATCTCGACGGCTTC 244516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621697262920