Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01-
27] 61 sequences; 20,750,089 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq57 179 7e-40
seq11 145 1e-29
seq59 127 4e-24
seq13 122 2e-22
seq35 98.7 2e-15
seq24 98.7 2e-15
seq9 98.7 2e-15
seq6 98.7 2e-15
seq1 98.7 2e-15
seq15 96.9 6e-15
>seq57
Length=1280291
Score = 179 bits (198), Expect = 7e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|||||||| || |||| || | ||| || || ||||| || |||||||| ||||| ||
Sbjct 959599 CCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAA 959658
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | ||||||||| ||||| || | | || |||||||| ||
Sbjct 959659 AGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 959718
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| |||||||| |||||||| ||||| ||||| | || || ||
Sbjct 959719 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCAACC 959778
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||| || || ||||||||||||||||| ||||||||
Sbjct 959779 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 959825
>seq11
Length=389204
Score = 145 bits (160), Expect = 1e-29
Identities = 283/418 (68%), Gaps = 0/418 (0%)
Strand=Plus/Minus
Query 30824 GTAATACATAAGCGTCTTGAGACCCTTCTTCCATGCATAGAACAGCATGGAAGACATTGA 30883
||| ||||| ||||||||||||||||||||| | ||||| |||| || | |
Sbjct 263363 GTAGTACATGCCCGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTG 263304
Query 30884 CTTCATAGAGGGCGCTGCAACGAAGAGGTTCATGCTCTGTGTCTGGTCAACAAACGGACC 30943
| ||| | |||| | | | || ||| | ||| | |||||| | |||| ||
Sbjct 263303 CGCCATGGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCTCC 263244
Query 30944 GCGGTCTGCTGCAAGGTCAATGACGGTCTTCATAGACAGCTCCCATGCGGTCTTGTAGAT 31003
|||||| || | ||||| |||||| |||| || | |||||| | |||||||||||
Sbjct 263243 GCGGTCGGCGGAGAGGTCGATGACGACCTTCTGCGAGATCTCCCACACCGTCTTGTAGAT 263184
Query 31004 TGCCTTGAGCTCAGGGTGGATGCCAATGACACGTTGGATGGACCCCCCGTTGGCAATAAT 31063
|||||||||| |||| || ||| ||||| || || || || || ||
Sbjct 263183 GCGCTTGAGCTCATCAGGGATACCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGAT 263124
Query 31064 CTGGTTCTTCATGGCCTCGGACCACGTGCCACGAGCGATGAGGTCGCGCACGAGGTAGTT 31123
| ||||||||| || ||| |||| ||| || ||| ||||||||| | ||| ||
Sbjct 263123 CGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGG 263064
Query 31124 GTTGACCACAGGGAACTCTCCAGCAAGGGTCCGGCGGCTGTACAGATTAGAAGTGATCGG 31183
|||||| || ||||||| || || ||| |||||| |||| | || || ||| |||
Sbjct 263063 GTTGACGACTTGGAACTCGCCGGCGAGGACACGGCGGGTGTAGATGTTGGACGTGTACGG 263004
Query 31184 CTCCATAGCCTCTACGGACCCGCAGATTTGCGCGGTGGATGCGGTGGGCATCAGCGCG 31241
||| | ||||| | | || ||| || ||| || ||||| |||||| |||||
Sbjct 263003 CTCGAACGCCTCGTTGAAGCCAAGGATCTGACTGGTCGACGCGGTCGGCATCGGCGCG 262946
>seq59
Length=937750
Score = 127 bits (140), Expect = 4e-24
Identities = 136/180 (76%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||| || || | |||| ||| ||||| ||||| || || |||||||| ||| |
Sbjct 937552 CCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTG 937493
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||| || || | |||||| |||||||| || | | || ||||| || |||
Sbjct 937492 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 937433
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| ||||||||| ||||||||||| | || || |||
Sbjct 937432 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGACTCGACT 937373
Score = 86.0 bits (94), Expect = 1e-11
Identities = 204/306 (67%), Gaps = 2/306 (1%)
Strand=Plus/Plus
Query 9981 TTGGACTTGCCCTCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAAC 10040
|||| ||||||||| | || || | ||||| ||||| || |||||||| | |
Sbjct 884371 TTGGTCTTGCCCTCCATCGAGATCATGTCCATAAAGTCGAACGGGTTCTCCTTGTGGTAG 884430
Query 10041 TGCTTGGGGTAACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTC 10100
||| || |||||||| | | | ||||| |||||||||||||||||||||| |
Sbjct 884431 ATCTTCTCGTTGCCGAGTGCGATAAGCAATCGGTCTGCCACGAACTCGATGTACTGGCAC 884490
Query 10101 ATCAGGTCCGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTT 10160
|| ||||| ||||||||| || | | ||| | || ||| | ||| ||||
Sbjct 884491 ATGAGGTCGCTGTTCATGCCGATAAGCTTGACGGGCAGCGCCTCGGTGAGGAACTCCTGC 884550
Query 10161 TCGTTGGCGACCGCTTCCTCGACGATGCTCTTTACCACGTCAAGG-GACAGCTTGTTCTC 10219
||| | ||||||| || | ||||| || ||| || || || || | |||
Sbjct 884551 TCGATCTCGACCGCCTCGCGAATGATGCGCTCGACCGTTTCGGGGTGAGGGC-GGCGCTC 884609
Query 10220 GAGCTTCGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAA 10279
||| | ||| | ||||| |||| | |||||| ||||||||||| |||||
Sbjct 884610 GAGGTGCGAGAAGAGGAGGCAGGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAGATGAG 884669
Query 10280 CTCGTT 10285
||||||
Sbjct 884670 CTCGTT 884675
>seq13
Length=1522988
Score = 122 bits (134), Expect = 2e-22
Identities = 329/495 (66%), Gaps = 30/495 (6%)
Strand=Plus/Minus
Query 225514 GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTC 225573
|||||| || |||||| ||||||| |||||| || || ||||| || || ||||||||
Sbjct 1444483 GAGCCAGGCGACGTTGAGCACGTCCAAGTGGTTGGTCGGCTCGTCGAGGAGGAGGATGTC 1444424
Query 225574 AGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGA 225633
|| || | |||||||||||| | ||| | |||||||| ||||| || || || || ||
Sbjct 1444423 GGCCTCGAAGAGGATGGCGCGGGCGAGCGCGAGCTTCATCTTCCAACCGCCCGAGAGCGA 1444364
Query 225634 GCCGATTGAAACAGAGTGCTTAGCTTCGTCA---AAGCCGT---ACTCCAGGAGCGTCTG 225687
||||| | | | | || ||| |||||| |||| |||| |||
Sbjct 1444363 ACCGATGG---CGGCCTCCTGGCGCTCGCGGGTGAAGCCGACCGACTCGAGGA-CGTTGC 1444308
Query 225688 GATAATG-----CGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGGTAA 225742
| | | || || ||| | |||| | | ||| || || |||||| |
Sbjct 1444307 GGCACTCGTCCTCGTTCTTGAG-GATGCGCTTGTCC---TTGAGGACGAACGAGATG--- 1444255
Query 225743 TCATATACGGTCATGTCCGAGACAGACGC-GTCAATGTCGTGGTCCACGTACACCGTCCG 225801
|| || | ||||| | | ||| ||| | |||||| || ||||| | ||| ||
Sbjct 1444254 ----ATCGAGT--TCTCCGACTC-GTCGCCGTCGACGTCGTGCTCGACGTAGAACGTGCG 1444202
Query 225802 GAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGT 225861
|| || | |||||||||||| | ||| || || | ||||| || | |||||
Sbjct 1444201 GACCTCGTCGGGCGAGGGGAAGCCCTCGACCTGACCGTTGTCGATCGCGCGCATGAGGGT 1444142
Query 225862 ACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAG 225921
|||||||| |||||| | || ||| ||||| | | || ||||||| | |||
Sbjct 1444141 CGACTTGCCCGATCCGTTGCGTCCACAGAGACCGTAGCGGTGTCCACGCTTGAGGCGGAG 1444082
Query 225922 GCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAG 225981
| | | ||| |||||||||||| | || || || || |||||| ||| | ||||||
Sbjct 1444081 GGTGGCCGTGTTGAGGAGGATCTTGGCGCCGTACGCGAGCGAGAACGTGCAGTTGCACAG 1444022
Query 225982 GTCCTCACCCTCCTC 225996
|||||| ||||||||
Sbjct 1444021 GTCCTCGCCCTCCTC 1444007
>seq35
Length=1438278
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 1310626 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 1310567
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 1310566 CCCACATTGGGC 1310555
>seq24
Length=1461436
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 1300219 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 1300278
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 1300279 CCCACATTGGGC 1300290
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 1306812 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 1306753
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 1306752 CCCACATTGGGC 1306741
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 1319845 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 1319904
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 1319905 CCCACATTGGGC 1319916
>seq9
Length=584576
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 493993 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 494052
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 494053 CCCACATTGGGC 494064
>seq6
Length=733724
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 517577 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 517518
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 517517 CCCACATTGGGC 517506
>seq1
Length=1786154
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 776376 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 776435
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 776436 CCCACATTGGGC 776447
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 790611 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 790552
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 790551 CCCACATTGGGC 790540
>seq15
Length=278969
Score = 96.9 bits (106), Expect = 6e-15
Identities = 143/199 (72%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 9981 TTGGACTTGCCCTCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAAC 10040
|||| ||||||||| | || || | |||||| ||||| || ||||||||||| ||
Sbjct 244712 TTGGTCTTGCCCTCCATCGAGATCATCTCCATAAAGTCGAACGGGTTCTCGGCATTGTAC 244653
Query 10041 TGCTTGGGGTAACCGAGTGCTGTGAA--AATGCGGTCAGCCACGAACTCGATGTACTGGC 10098
||||| || ||||| || | || ||| ||||| || ||||||||||||||||| |
Sbjct 244652 AGCTTGTCGTTCCCGAGCGC-GACAAGCAAT-CGGTCCGCGACGAACTCGATGTACTGTC 244595
Query 10099 TCATCAGGTCCGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCT 10158
||| ||| | ||||||||| |||| || | ||| | |||||| | ||| || |
Sbjct 244594 GCATGAGGGTGGCGTTCATGCCGATCAAGCCGACGGGCAAGGCGTCCGTCAGGAATTCTT 244535
Query 10159 TTTCGTTGGCGACCGCTTC 10177
||| | |||| |||||
Sbjct 244534 GCTCGATCTCGACGGCTTC 244516
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921621697262920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |