Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01-
27] 61 sequences; 20,750,089 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq11 280 3e-70
seq59 161 2e-34
seq15 111 3e-19
>seq11
Length=389204
Score = 280 bits (310), Expect = 3e-70
Identities = 555/811 (68%), Gaps = 14/811 (2%)
Strand=Plus/Minus
Query 244792 GTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGAC 244851
|||| |||||||||||||||||||||||| || ||||||| |||||| ||||||
Sbjct 262232 GTTGGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGAT 262173
Query 244852 GCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTG-CCCTCTGCCTCGTAGC 244910
| || |||||| | | || | || | || | | | ||||| ||| ||
Sbjct 262172 GGCGTACCAGAGCTTCTGGGCGGGAATGGTGC-GCTTGGCGCGACCCTCCTTCTCATACT 262114
Query 244911 GGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCG 244970
| |||| ||| ||||||| ||| ||||||||| |||||||| | || |
Sbjct 262113 TCTCGAACAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCGGCAG 262054
Query 244971 GGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCC 245030
|||| | ||| ||| |||||| | || ||| | || ||||||||||||||| ||||
Sbjct 262053 GGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCC 261994
Query 245031 AGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCT 245090
||||||| ||| | ||| | | | ||| ||| ||| |||||| | || |
Sbjct 261993 AGAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGT 261934
Query 245091 CCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCC 245150
| | || || |||| |||| ||||||| ||||| | ||||| |||| ||||| || |
Sbjct 261933 CGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGC 261874
Query 245151 GCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCA 245210
|||||||||| |||||||| || | | || |||| | | ||| || | || |
Sbjct 261873 GCTTGTTGCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGA 261814
Query 245211 CTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGC 245270
|||||||| |||| |||||| ||||| |||||| | ||| | | | || ||||
Sbjct 261813 TGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGT 261754
Query 245271 TGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGT 245330
||| || | || | |||||||| |||||||||||| ||||| |||||| ||||
Sbjct 261753 GGATCGAGAGACCGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGT 261694
Query 245331 CTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGG 245390
| |||||||| || ||| |||||| ||| || ||||| || || ||||| |
Sbjct 261693 CGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCG 261634
Query 245391 GCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGA 245450
| | || ||| | |||||| || || || |||||| |||||||| || ||| |
Sbjct 261633 GGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACCGCTCCGACA 261574
Query 245451 GGAACCCGTACGTCTGGAGCAGAGCG-TCGATGTTGTCGCCGTGGATCTGCAGGGCGC-A 245508
|| |||||||| || | | ||| || |||| ||||||||||| ||| | ||| |
Sbjct 261573 TGAGGTTGTACGTCTCGATC-GCGCGCTCAATGTCGTCGCCGTGGA--TGCCGACCGCGA 261517
Query 245509 C-CTCATGAGGGTGTGCTGGGGCGTCTCG---ATGGGTCCCTCGGGTCCCTTGAGCATGT 245564
| | |||||| ||||||| || |||| | || ||| | | ||||| ||
Sbjct 261516 CACGCATGAGCATGTGCTGCGGTCGCTCGGCCACCTTGCCGTCGAGGC---GGAGCAGGT 261460
Query 245565 AGGAGCGCTCGAGCGTCTTGAACCCAAAGTA 245595
| || ||||||||||||||||| || |||||
Sbjct 261459 ACGACCGCTCGAGCGTCTTGAAGCCGAAGTA 261429
Score = 179 bits (198), Expect = 7e-40
Identities = 607/940 (65%), Gaps = 68/940 (7%)
Strand=Plus/Minus
Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796
||| |||||| || || |||||||||| ||| | |||||||||||||| ||||||
Sbjct 263404 ACGGTGAACTTGATGGCGCCGACGGCGGCGCGGGTACGGAGGTAGTACATGCCCGTCTTG 263345
Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856
|| || | |||| ||| || |||||| | ||| |||| | ||| ||
Sbjct 263344 AGACCCTTCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTGCGCCAT-----------GG 263296
Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCT 243916
||| | || | || || |||||| ||||| |||||||| ||| | | || ||
Sbjct 263295 TCGGCGACG-AGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCTCCGCGGTCG 263237
Query 243917 GCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTG 243976
|||| | | ||||| | ||||||| || ||||| || |||||||||||||| |||||
Sbjct 263236 GCGGAGAGGTCGATGACGACCTTCTGCGAGATCTCCCACACCGTCTTGTAGATGCGCTTG 263177
Query 243977 AGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTG 244036
|| | || |||| || || |||||| | |||||| ||||| |||||| | | |
Sbjct 263176 AGCTCATCAGGGATACCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGTGTTC 263117
Query 244037 CGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCC---TGTTC 244093
||| |||||||||||||| ||| || | ||| ||| ||| |||
Sbjct 263116 TTCATCGCGTCGTTCCACAGGCC---GCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTTG 263060
Query 244094 ACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCG 244153
|| || || ||||| || | || || ||||| ||||| |||| || |||||||
Sbjct 263059 ACGACTTGGAACTCGCCGGCGAGGACACGGCGGGTGTAGATGTTGGACGTGTACGGCTCG 263000
Query 244154 ATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCG---ACACC 244210
| ||| || ||| || ||||| || ||| |||||||| |||| | ||
Sbjct 262999 AACGCCTCGTTGAAGCCAAGGATCTGACTGGTCGACGCGGTCGGCATCGGCGCGCAGACG 262940
Query 244211 AGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCAC 244270
||| || ||| | | ||||||| |||| | ||| ||| ||| | || |
Sbjct 262939 AGC-GA--GTTGCGGATGCCGTGC-------TGCGCAATCT--TCTCCTTCAACTCGGCC 262892
Query 244271 ATGCCCGAGAGGTCC-TCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329
| || | |||||| ||| | ||| | ||||| ||| |||||| || || | |||
Sbjct 262891 CAGTCCCACAGGTCCGTCG-GCGTGACGTTCCACAGGTCGTACTGCAAGAGGCCGTGGCT 262833
Query 244330 GACGGG---GCTGC------CCTCGTAGGTCGGGTA------GGGACCGTCGCGCTGGGC 244374
|||| || || ||| ||| | ||||| ||| || || | |||||
Sbjct 262832 CGCGGGCGAGCCGCCGTTCTCCTTGTACGAGGGGTACCAGCCGGGCTCGCCGGGGTGGGC 262773
Query 244375 CA--GCTTA---------CAGCTCTC-------GTCGAGGGCGGCGTAGTAGATGGTCTC 244416
| || || || || | |||| ||||||| |||||| |||||
Sbjct 262772 GATGGCGTAGTCGCGGGCCATGTCGCACGACGACTCGATCGCGGCGTGGTAGATCGTCTC 262713
Query 244417 GAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCAT 244476
||||||| ||| | || ||| |||| | || ||| || | | | |||
Sbjct 262712 GAAGATCTGGACGTTGAGGTGGCGCGCCTCGGGCGAGTCGAACGGCAGACGGAGGGCCAT 262653
Query 244477 GAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCG 244536
|||| ||||||| || |||||||| ||||| ||||| || | ||| || |||| |||
Sbjct 262652 GAAGGCGTCGGCGAGACCCTGCACACCGATACCGATCGGGCGGTGGCGGAAGTTGCTGCG 262593
Query 244537 CATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGAT 244596
| ||| || |||||||| ||||| ||||||| | ||| | |||| ||||
Sbjct 262592 CTCGGCCTCCTTGACGGGGTAGTAGTTGACGTCGATGATGCGGTTCAAGTTGTACGTGAC 262533
Query 244597 CATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCG 244636
| |||||||||| |||| || ||||||||||||
Sbjct 262532 GACCTTGACGACGTCGTGCAGCTTCTTGAAGTCGTACTCG 262493
>seq59
Length=937750
Score = 161 bits (178), Expect = 2e-34
Identities = 226/311 (73%), Gaps = 7/311 (2%)
Strand=Plus/Minus
Query 42806 GAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTC 42865
|||||| |||||| | |||||||| || || | ||||||||||||||||| |||||
Sbjct 884676 GAACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTC 884617
Query 42866 GAGCCACCTCAGGCACAAGCCCTCGAAG-GAGCGGGTCCGGGCCATCATCACGGAGGCCG 42924
| |||||| || | |||||| || |||| | |||||| ||||| |
Sbjct 884616 G---CACCTCGAGCGCC-GCCCTCACCCCGAAACGGTCGAGCGCATCATTCGCGAGGCGG 884561
Query 42925 TGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACC 42984
| ||||||||| ||||||||||||| || |||||||||| || |||||||||||
Sbjct 884560 TCGAGATCGAGCAGGAGTTCCTCACCGAGGCGCTGCCCGTCAAGCTTATCGGCATGAACA 884501
Query 42985 ACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACC-ATCTCCTGTGCCAGATGGGT 43043
||||||||||||| |||||||| ||| ||| || |||| || | | | || ||
Sbjct 884500 GCGACCTCATGTGCCAGTACATCGAGTTCGTGGCAGACCGATTGCTTATCGCACTCGGCA 884441
Query 43044 CTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAG 43103
|| | ||||| ||| | | ||| |||||||||||||| | |||||| |||||
Sbjct 884440 ACGAGAAG-ATCTACCACAAGGAGAACCCGTTCGACTTTATGGACATGATCTCGATGGAG 884382
Query 43104 GGCAAGACCAA 43114
|||||||||||
Sbjct 884381 GGCAAGACCAA 884371
Score = 152 bits (168), Expect = 1e-31
Identities = 141/175 (81%), Gaps = 4/175 (2%)
Strand=Plus/Minus
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692
||||||||| |||||||||| || |||||||||| |||||| | | | | ||| ||
Sbjct 884947 CCCTGCATCCAGAAGAAGGCCGAGTGGGCGCTCACTTGGATCTCG-GACGAG-CGCTCCG 884890
Query 42693 T--TCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCT 42750
| |||||||| | || || || || ||||||||||||||||||||||||| ||| | |
Sbjct 884889 TCTTCGGCGAGCGCCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGT 884830
Query 42751 TCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTC 42805
|||| |||||||||||||||||| || | | |||||||||||||||||||||
Sbjct 884829 TCGCGTCCATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACCTTCTC 884775
>seq15
Length=278969
Score = 111 bits (122), Expect = 3e-19
Identities = 129/174 (74%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692
||||||||| |||||||| || |||||||| |||||| | || | |||
Sbjct 244176 CCCTGCATCGCCAAGAAGGCCGAGTGGGCGCTTCGATGGATCTCGGACCCTGGCGCCGTC 244235
Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752
|| | || | ||||| || || |||| |||||||||||||||||||| ||| | |||
Sbjct 244236 TTTGCGGAACGACTGGTCGCTTTCGCCGCTGTCGAGGGCATCTTCTTCTCCGGCTCGTTC 244295
Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCG 42806
||||| ||||||||||||||| || || | ||||||||| | || ||||||
Sbjct 244296 GCCTCGATCTTCTGGCTCAAGAAGCGGGGCTTGATGCCCGGTTTGACGTTCTCG 244349
Score = 86.0 bits (94), Expect = 1e-11
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482
|| ||||||||||||||||| |||||||| || || |||||| ||| |||||| |
Sbjct 243852 CTCGCCTTCTTCGCCGCCTCGGACGGCATCGTGAACGAGAACTTGGTGGAGAGGTTCTCG 243911
Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGAT 42529
||||||||| | ||||| ||||| |||||||| ||||||||
Sbjct 243912 GCCGAGGTGCAGATCGCCGAGGCCCGCTGTTTCTACGGTTTCCAGAT 243958
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944338479941360
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