Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01- 27] 61 sequences; 20,750,089 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq11 280 3e-70 seq59 161 2e-34 seq15 111 3e-19 >seq11 Length=389204 Score = 280 bits (310), Expect = 3e-70 Identities = 555/811 (68%), Gaps = 14/811 (2%) Strand=Plus/Minus Query 244792 GTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGAC 244851 |||| |||||||||||||||||||||||| || ||||||| |||||| |||||| Sbjct 262232 GTTGGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGAT 262173 Query 244852 GCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTG-CCCTCTGCCTCGTAGC 244910 | || |||||| | | || | || | || | | | ||||| ||| || Sbjct 262172 GGCGTACCAGAGCTTCTGGGCGGGAATGGTGC-GCTTGGCGCGACCCTCCTTCTCATACT 262114 Query 244911 GGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCG 244970 | |||| ||| ||||||| ||| ||||||||| |||||||| | || | Sbjct 262113 TCTCGAACAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCGGCAG 262054 Query 244971 GGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCC 245030 |||| | ||| ||| |||||| | || ||| | || ||||||||||||||| |||| Sbjct 262053 GGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCC 261994 Query 245031 AGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCT 245090 ||||||| ||| | ||| | | | ||| ||| ||| |||||| | || | Sbjct 261993 AGAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGT 261934 Query 245091 CCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCC 245150 | | || || |||| |||| ||||||| ||||| | ||||| |||| ||||| || | Sbjct 261933 CGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGC 261874 Query 245151 GCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCA 245210 |||||||||| |||||||| || | | || |||| | | ||| || | || | Sbjct 261873 GCTTGTTGCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGA 261814 Query 245211 CTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGC 245270 |||||||| |||| |||||| ||||| |||||| | ||| | | | || |||| Sbjct 261813 TGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGT 261754 Query 245271 TGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGT 245330 ||| || | || | |||||||| |||||||||||| ||||| |||||| |||| Sbjct 261753 GGATCGAGAGACCGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGT 261694 Query 245331 CTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGG 245390 | |||||||| || ||| |||||| ||| || ||||| || || ||||| | Sbjct 261693 CGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCG 261634 Query 245391 GCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGA 245450 | | || ||| | |||||| || || || |||||| |||||||| || ||| | Sbjct 261633 GGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACCGCTCCGACA 261574 Query 245451 GGAACCCGTACGTCTGGAGCAGAGCG-TCGATGTTGTCGCCGTGGATCTGCAGGGCGC-A 245508 || |||||||| || | | ||| || |||| ||||||||||| ||| | ||| | Sbjct 261573 TGAGGTTGTACGTCTCGATC-GCGCGCTCAATGTCGTCGCCGTGGA--TGCCGACCGCGA 261517 Query 245509 C-CTCATGAGGGTGTGCTGGGGCGTCTCG---ATGGGTCCCTCGGGTCCCTTGAGCATGT 245564 | | |||||| ||||||| || |||| | || ||| | | ||||| || Sbjct 261516 CACGCATGAGCATGTGCTGCGGTCGCTCGGCCACCTTGCCGTCGAGGC---GGAGCAGGT 261460 Query 245565 AGGAGCGCTCGAGCGTCTTGAACCCAAAGTA 245595 | || ||||||||||||||||| || ||||| Sbjct 261459 ACGACCGCTCGAGCGTCTTGAAGCCGAAGTA 261429 Score = 179 bits (198), Expect = 7e-40 Identities = 607/940 (65%), Gaps = 68/940 (7%) Strand=Plus/Minus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| |||||| || || |||||||||| ||| | |||||||||||||| |||||| Sbjct 263404 ACGGTGAACTTGATGGCGCCGACGGCGGCGCGGGTACGGAGGTAGTACATGCCCGTCTTG 263345 Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856 || || | |||| ||| || |||||| | ||| |||| | ||| || Sbjct 263344 AGACCCTTCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTGCGCCAT-----------GG 263296 Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCT 243916 ||| | || | || || |||||| ||||| |||||||| ||| | | || || Sbjct 263295 TCGGCGACG-AGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCTCCGCGGTCG 263237 Query 243917 GCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTG 243976 |||| | | ||||| | ||||||| || ||||| || |||||||||||||| ||||| Sbjct 263236 GCGGAGAGGTCGATGACGACCTTCTGCGAGATCTCCCACACCGTCTTGTAGATGCGCTTG 263177 Query 243977 AGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTG 244036 || | || |||| || || |||||| | |||||| ||||| |||||| | | | Sbjct 263176 AGCTCATCAGGGATACCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGTGTTC 263117 Query 244037 CGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCC---TGTTC 244093 ||| |||||||||||||| ||| || | ||| ||| ||| ||| Sbjct 263116 TTCATCGCGTCGTTCCACAGGCC---GCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTTG 263060 Query 244094 ACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCG 244153 || || || ||||| || | || || ||||| ||||| |||| || ||||||| Sbjct 263059 ACGACTTGGAACTCGCCGGCGAGGACACGGCGGGTGTAGATGTTGGACGTGTACGGCTCG 263000 Query 244154 ATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCG---ACACC 244210 | ||| || ||| || ||||| || ||| |||||||| |||| | || Sbjct 262999 AACGCCTCGTTGAAGCCAAGGATCTGACTGGTCGACGCGGTCGGCATCGGCGCGCAGACG 262940 Query 244211 AGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCAC 244270 ||| || ||| | | ||||||| |||| | ||| ||| ||| | || | Sbjct 262939 AGC-GA--GTTGCGGATGCCGTGC-------TGCGCAATCT--TCTCCTTCAACTCGGCC 262892 Query 244271 ATGCCCGAGAGGTCC-TCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329 | || | |||||| ||| | ||| | ||||| ||| |||||| || || | ||| Sbjct 262891 CAGTCCCACAGGTCCGTCG-GCGTGACGTTCCACAGGTCGTACTGCAAGAGGCCGTGGCT 262833 Query 244330 GACGGG---GCTGC------CCTCGTAGGTCGGGTA------GGGACCGTCGCGCTGGGC 244374 |||| || || ||| ||| | ||||| ||| || || | ||||| Sbjct 262832 CGCGGGCGAGCCGCCGTTCTCCTTGTACGAGGGGTACCAGCCGGGCTCGCCGGGGTGGGC 262773 Query 244375 CA--GCTTA---------CAGCTCTC-------GTCGAGGGCGGCGTAGTAGATGGTCTC 244416 | || || || || | |||| ||||||| |||||| ||||| Sbjct 262772 GATGGCGTAGTCGCGGGCCATGTCGCACGACGACTCGATCGCGGCGTGGTAGATCGTCTC 262713 Query 244417 GAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCAT 244476 ||||||| ||| | || ||| |||| | || ||| || | | | ||| Sbjct 262712 GAAGATCTGGACGTTGAGGTGGCGCGCCTCGGGCGAGTCGAACGGCAGACGGAGGGCCAT 262653 Query 244477 GAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCG 244536 |||| ||||||| || |||||||| ||||| ||||| || | ||| || |||| ||| Sbjct 262652 GAAGGCGTCGGCGAGACCCTGCACACCGATACCGATCGGGCGGTGGCGGAAGTTGCTGCG 262593 Query 244537 CATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGAT 244596 | ||| || |||||||| ||||| ||||||| | ||| | |||| |||| Sbjct 262592 CTCGGCCTCCTTGACGGGGTAGTAGTTGACGTCGATGATGCGGTTCAAGTTGTACGTGAC 262533 Query 244597 CATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCG 244636 | |||||||||| |||| || |||||||||||| Sbjct 262532 GACCTTGACGACGTCGTGCAGCTTCTTGAAGTCGTACTCG 262493 >seq59 Length=937750 Score = 161 bits (178), Expect = 2e-34 Identities = 226/311 (73%), Gaps = 7/311 (2%) Strand=Plus/Minus Query 42806 GAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTC 42865 |||||| |||||| | |||||||| || || | ||||||||||||||||| ||||| Sbjct 884676 GAACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTC 884617 Query 42866 GAGCCACCTCAGGCACAAGCCCTCGAAG-GAGCGGGTCCGGGCCATCATCACGGAGGCCG 42924 | |||||| || | |||||| || |||| | |||||| ||||| | Sbjct 884616 G---CACCTCGAGCGCC-GCCCTCACCCCGAAACGGTCGAGCGCATCATTCGCGAGGCGG 884561 Query 42925 TGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACC 42984 | ||||||||| ||||||||||||| || |||||||||| || ||||||||||| Sbjct 884560 TCGAGATCGAGCAGGAGTTCCTCACCGAGGCGCTGCCCGTCAAGCTTATCGGCATGAACA 884501 Query 42985 ACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACC-ATCTCCTGTGCCAGATGGGT 43043 ||||||||||||| |||||||| ||| ||| || |||| || | | | || || Sbjct 884500 GCGACCTCATGTGCCAGTACATCGAGTTCGTGGCAGACCGATTGCTTATCGCACTCGGCA 884441 Query 43044 CTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAG 43103 || | ||||| ||| | | ||| |||||||||||||| | |||||| ||||| Sbjct 884440 ACGAGAAG-ATCTACCACAAGGAGAACCCGTTCGACTTTATGGACATGATCTCGATGGAG 884382 Query 43104 GGCAAGACCAA 43114 ||||||||||| Sbjct 884381 GGCAAGACCAA 884371 Score = 152 bits (168), Expect = 1e-31 Identities = 141/175 (81%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 ||||||||| |||||||||| || |||||||||| |||||| | | | | ||| || Sbjct 884947 CCCTGCATCCAGAAGAAGGCCGAGTGGGCGCTCACTTGGATCTCG-GACGAG-CGCTCCG 884890 Query 42693 T--TCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCT 42750 | |||||||| | || || || || ||||||||||||||||||||||||| ||| | | Sbjct 884889 TCTTCGGCGAGCGCCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGT 884830 Query 42751 TCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTC 42805 |||| |||||||||||||||||| || | | ||||||||||||||||||||| Sbjct 884829 TCGCGTCCATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACCTTCTC 884775 >seq15 Length=278969 Score = 111 bits (122), Expect = 3e-19 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 ||||||||| |||||||| || |||||||| |||||| | || | ||| Sbjct 244176 CCCTGCATCGCCAAGAAGGCCGAGTGGGCGCTTCGATGGATCTCGGACCCTGGCGCCGTC 244235 Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 || | || | ||||| || || |||| |||||||||||||||||||| ||| | ||| Sbjct 244236 TTTGCGGAACGACTGGTCGCTTTCGCCGCTGTCGAGGGCATCTTCTTCTCCGGCTCGTTC 244295 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCG 42806 ||||| ||||||||||||||| || || | ||||||||| | || |||||| Sbjct 244296 GCCTCGATCTTCTGGCTCAAGAAGCGGGGCTTGATGCCCGGTTTGACGTTCTCG 244349 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||||||||| |||||||| || || |||||| ||| |||||| | Sbjct 243852 CTCGCCTTCTTCGCCGCCTCGGACGGCATCGTGAACGAGAACTTGGTGGAGAGGTTCTCG 243911 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGAT 42529 ||||||||| | ||||| ||||| |||||||| |||||||| Sbjct 243912 GCCGAGGTGCAGATCGCCGAGGCCCGCTGTTTCTACGGTTTCCAGAT 243958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338479941360