Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01- 27] 61 sequences; 20,750,089 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq11 116 4e-21 seq59 100 3e-16 >seq11 Length=389204 Score = 116 bits (128), Expect = 4e-21 Identities = 434/662 (66%), Gaps = 25/662 (4%) Strand=Plus/Minus Query 153809 GCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGC 153868 ||| ||||| |||| || |||| |||| || ||||||||||||||| ||| Sbjct 262133 GCGACCCTCCTTCTCATACTTCTCGAACAGCTCCTTGAACTCGTCGCCGTAGACCTCGTG 262074 Query 153869 GAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGT-CGGCGTTGACGCGTC 153927 ||||||||| || || || | || | ||| ||| | || | ||| || Sbjct 262073 GAGGCCGGGTGCCTCGGCAGGGCAGAAGAGGGGCCAGTCGCCGTTCTGC-TCGACACGCT 262015 Query 153928 GCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCG 153987 |||||| || || || | |||||| || | | | ||||||||| | |||||| Sbjct 262014 CCATGAAGAGGTCGGGAATCCAGAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCT 261955 Query 153988 CGCCCATGTTGCGTTTCAGA--TTGAGCA-CGCTATAGATGTCGGCGTGCCAGGGTTCAA 154044 ||| ||| || | || | ||| | | | | |||||||||||||||| || || | Sbjct 261954 TGCCGTGGTTC--TTGCGGAGGTCGAGGAACTCGA-AGATGTCGGCGTGCCACGGCTCGA 261898 Query 154045 TGTAGACGGCCAGGGCACCTTTACGCTTT---CCGCCCTGATCGACGTGGCGCACCATAT 154101 ||||| ||| | || || ||||| |||||||| ||||||| |||| | | | Sbjct 261897 GGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCGCCCTGGTCGACGTAGCGCGCGGTGT 261838 Query 154102 TGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCT 154161 ||||| | ||||| | |||||| | |||| | | | |||||| || ||| | Sbjct 261837 TGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGT 261778 Query 154162 TGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCG-CCGTACTTTGAT 154220 |||| ||||| | | || | | || ||||||||| |||| ||| || Sbjct 261777 ACGAGCCGGTCGCGCGGATGTTGTGGATCGAGAGACCGATGCCGCCGGCCGT-CTTGGAG 261719 Query 154221 ATGGCAGCGCA-GTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCC 154279 ||| ||||| ||| ||||| ||||||||| ||||| ||||| | Sbjct 261718 ATGAGCGCGCACGTCTTG-AGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATCGT 261660 Query 154280 GAGCAAGAAACACGAACACATTTGCGGAATGCG-CGTTCCCGCCGAAAAGAGGGTGGGAC 154338 || | ||| ||||| | | ||||| |||| ||| || || ||||| || || Sbjct 261659 GACGAGGAAGCACGACGAGAGCTGCGGG-TGCGGCGTGCCGGCGTTGAAGAGCGTCGGCG 261601 Query 154339 TCGCGTGCGTAAACAGTTTTTGGCTCAT-CATGCGGT---ACGTTTCGATGGCGTCTTCG 154394 ||||||||||| | |||| |||| ||| |||| ||||| ||| || Sbjct 261600 AGGCGTGCGTAAAG----TACCGCTCCGACATGAGGTTGTACGTCTCGATCGCGCGCTCA 261545 Query 154395 ATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCG 154454 || || |||||||| ||||||| |||||| |||||||||||||||||||| || ||||| Sbjct 261544 ATGTCGTCGCCGTGGATGCCGACCGCGACACGCATGAGCATGTGCTGCGGTCGCTCGGCC 261485 Query 154455 AC 154456 || Sbjct 261484 AC 261483 >seq59 Length=937750 Score = 100 bits (110), Expect = 3e-16 Identities = 216/312 (69%), Gaps = 11/312 (4%) Strand=Plus/Minus Query 52503 AACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAG 52562 |||||| | || ||||||||||| || || ||||| |||||||| |||||| || | Sbjct 884675 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCT-- 884618 Query 52563 ACGCGCGT-GACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGT 52621 ||| | | || || | | | || ||| || | |||| | |||||||| Sbjct 884617 -CGCACCTCGAGCGCCGCCCTC-ACCCCGAAACGGTCGAGCGCATCATTCGCGAGGCGGT 884560 Query 52622 GGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC-G 52680 | ||||| ||||||| | || | |||||||| ||| |||| | ||||||||| | Sbjct 884559 CGAGATCGAGCAGGAGTTCCTCACCGAGGCGCTGCCCGTCAAGCTTATCGGCATGAACAG 884500 Query 52681 CGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTG-TTGGTGCAGCTCGGG 52739 || || |||||| ||||||||||||| ||||| || || || || ||| ||| || Sbjct 884499 CGACCTC-ATGTGCCAGTACATCGAGTTCGTGGCAGACCGATTGCTTATCGCA-CTC-GG 884443 Query 52740 CAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGA 52798 || | | ||| || | || || ||||| || |||||| ||| || ||| | || Sbjct 884442 CAACGAGAAGATCTACCACAAGGAGAACCCGTTCGACTTTATGGACATGATCTCGATGGA 884383 Query 52799 GGGCAAGACCAA 52810 |||||||||||| Sbjct 884382 GGGCAAGACCAA 884371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262021599920