Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01- 27] 61 sequences; 20,750,089 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq57 125 7e-24 seq59 113 4e-20 seq15 102 8e-17 seq2 86.0 6e-12 seq12 84.2 2e-11 >seq57 Length=1280291 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||| | || | || ||||| || || || |||||||| Sbjct 959599 CCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAA 959658 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || ||||| || || ||| ||||||| |||||||| |||||||| Sbjct 959659 AGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 959718 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| || || ||||| | |||| ||||||| ||| || Sbjct 959719 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCAACC 959778 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 |||| ||| | || |||||||| || || || || || |||||||||| Sbjct 959779 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGG 959827 Score = 105 bits (116), Expect = 6e-18 Identities = 139/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||||||||| || | ||| || | || | || || || |||||||| |||||||| Sbjct 958680 TCCACCGCGCAACCTCAAAACGAGGTGCAGGGTCGATTCCTTTTGAATGTTGTAATCTTG 958739 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | |||||| || || ||||| || || ||| ||||||| |||||||| ||||| || Sbjct 958740 AAGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGCGG 958799 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||||||||||||| || || ||||| |||| |||| ||||| | ||||| Sbjct 958800 GATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG-TCGATCGTGTCGGACGACTCGA 958858 Query 127065 CTTCGACGGT 127074 | |||| ||| Sbjct 958859 CCTCGAGGGT 958868 >seq59 Length=937750 Score = 113 bits (124), Expect = 4e-20 Identities = 135/181 (75%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | ||| ||||| || ||||| || || |||| Sbjct 937552 CCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTG 937493 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| ||||||| |||||||| || || || Sbjct 937492 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 937433 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| || ||||| |||| |||| |||||||| |||||| Sbjct 937432 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG-TCGATGGTGTCCGACGACTCGAC 937374 Query 127066 T 127066 | Sbjct 937373 T 937373 Score = 104 bits (114), Expect = 2e-17 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | ||| ||||| || ||||| || || |||| Sbjct 936390 CCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTG 936331 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| ||||||| |||||||| || || || Sbjct 936330 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 936271 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| || || ||||| |||| |||| ||||| | |||||| Sbjct 936270 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG-TCGATCGTGTCGGACGACTCGAC 936212 Query 127066 TTCGACGGT 127074 |||| ||| Sbjct 936211 CTCGAGGGT 936203 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||| | || | || |||||||| || || |||||||| Sbjct 936080 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 936021 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || || ||||| || || ||| |||| | |||||||| |||||||| Sbjct 936020 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGG 935961 Query 127007 ATGCCCTCCTTGTCCGTGATTTT 127029 ||||||||||||||| ||| || Sbjct 935960 ATGCCCTCCTTGTCCTGGATCTT 935938 >seq15 Length=278969 Score = 102 bits (112), Expect = 8e-17 Identities = 213/314 (68%), Gaps = 15/314 (5%) Strand=Plus/Plus Query 47244 AACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTG---TCTCTACTA- 47299 |||||||| |||||| | || ||||| || |||||| |||||||||| ||||| | Sbjct 244408 AACGAGCTCATCTCGCGCGATGAAGGTCTTCACACCGACTTTGCCTGCCTTCTCTTTTCG 244467 Query 47300 CAACACTAGAGTCGATCAAAAGTTGGACGTGCCCACCGT--CAGCGACATGTTTGCCGAA 47357 || | | || | ||| || | || |||||||| || | | || | |||||| Sbjct 244468 CACCTCGAGCGCCGACCA------GCAC---CCCACCGTGTCACCCAGATTATCGCCGAA 244518 Query 47358 GCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATG 47417 ||||||| || ||| || || | | || || |||||| || | || ||| Sbjct 244519 GCCGTCGAGATCGAGCAAGAATTCCTGACGGACGCCTTGCCCGTCGGCTTGATCGGCATG 244578 Query 47418 AACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTA 47477 ||||| | ||| || |||||||||| || ||||| ||||| |||| || ||| Sbjct 244579 AACGCCACCCTCATGCGACAGTACATCGAGTTCGTCGCGGACCGATTGCTTGTCGCGCTC 244638 Query 47478 AAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTC 47537 | | |||| | ||| | ||||||| || ||||| |||||| | | || ||| | Sbjct 244639 GGGAACGACAAGCTGTACAATGCCGAGAACCCGTTCGACTTTATGGAGATGATCTCGATG 244698 Query 47538 GAGGGCAAGACCAA 47551 |||||||||||||| Sbjct 244699 GAGGGCAAGACCAA 244712 >seq2 Length=1701455 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || | || ||||| ||||| | | |||| ||| || || || || || Sbjct 1353915 CGTCGACTCGTTCTCGATGTTGTAGTCGCCGACTGCGCGATGATCTTCGAGTTGCTTCCC 1353856 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 ||| ||||||| |||||||| ||||| || ||||||||||||||| | | || ||| Sbjct 1353855 TGCGAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGGTCTTGACCTT 1353796 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGA 127070 || | | || ||||||| |||||| |||| Sbjct 1353795 GACGTCGTAGATTGTGTCCGACGACTCGACCTCGA 1353761 >seq12 Length=324675 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || || ||||||| ||||| || | ||| | || || || |||||| ||||| || Sbjct 137513 GCGCCGCCGCGTAGGCGCAAGACGAGATGAAGGGTCGAATCCCTTTGAACCTTGTAGTCT 137454 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | | |||||| || || ||||| || || ||| | || | |||||||| |||||| Sbjct 137453 TCGAGCGTGCGGCTGTCCTCGAGCTGCTTCCCCGCGAACATGAGCCGCTGCTGGTCGGGA 137394 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA 127037 || ||||||||||||||| ||| || ||||| Sbjct 137393 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA 137360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500437430640