Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01-
27] 61 sequences; 20,750,089 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq57 125 7e-24
seq59 113 4e-20
seq15 102 8e-17
seq2 86.0 6e-12
seq12 84.2 2e-11
>seq57
Length=1280291
Score = 125 bits (138), Expect = 7e-24
Identities = 165/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|| ||||| | |||| ||| | || | || ||||| || || || ||||||||
Sbjct 959599 CCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAA 959658
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || ||| ||| || ||||| || || ||| ||||||| |||||||| ||||||||
Sbjct 959659 AGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 959718
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| || || ||||| | |||| ||||||| ||| ||
Sbjct 959719 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCAACC 959778
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115
|||| ||| | || |||||||| || || || || || ||||||||||
Sbjct 959779 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGG 959827
Score = 105 bits (116), Expect = 6e-18
Identities = 139/190 (73%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
||||||||| || | ||| || | || | || || || |||||||| ||||||||
Sbjct 958680 TCCACCGCGCAACCTCAAAACGAGGTGCAGGGTCGATTCCTTTTGAATGTTGTAATCTTG 958739
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
| |||||| || || ||||| || || ||| ||||||| |||||||| ||||| ||
Sbjct 958740 AAGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGCGG 958799
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064
||||||||||||||| || || ||||| |||| |||| ||||| | |||||
Sbjct 958800 GATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG-TCGATCGTGTCGGACGACTCGA 958858
Query 127065 CTTCGACGGT 127074
| |||| |||
Sbjct 958859 CCTCGAGGGT 958868
>seq59
Length=937750
Score = 113 bits (124), Expect = 4e-20
Identities = 135/181 (75%), Gaps = 2/181 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | ||||| || | ||| ||||| || ||||| || || ||||
Sbjct 937552 CCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTG 937493
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| || || ||||| || || ||| ||||||| |||||||| || || ||
Sbjct 937492 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 937433
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||||| ||| || ||||| |||| |||| |||||||| ||||||
Sbjct 937432 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG-TCGATGGTGTCCGACGACTCGAC 937374
Query 127066 T 127066
|
Sbjct 937373 T 937373
Score = 104 bits (114), Expect = 2e-17
Identities = 138/189 (73%), Gaps = 2/189 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | ||||| || | ||| ||||| || ||||| || || ||||
Sbjct 936390 CCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTG 936331
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| || || ||||| || || ||| ||||||| |||||||| || || ||
Sbjct 936330 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 936271
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||||| || || ||||| |||| |||| ||||| | ||||||
Sbjct 936270 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG-TCGATCGTGTCGGACGACTCGAC 936212
Query 127066 TTCGACGGT 127074
|||| |||
Sbjct 936211 CTCGAGGGT 936203
Score = 82.4 bits (90), Expect = 7e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|| ||||| | |||| ||| | || | || |||||||| || || ||||||||
Sbjct 936080 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 936021
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || ||| || || ||||| || || ||| |||| | |||||||| ||||||||
Sbjct 936020 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGG 935961
Query 127007 ATGCCCTCCTTGTCCGTGATTTT 127029
||||||||||||||| ||| ||
Sbjct 935960 ATGCCCTCCTTGTCCTGGATCTT 935938
>seq15
Length=278969
Score = 102 bits (112), Expect = 8e-17
Identities = 213/314 (68%), Gaps = 15/314 (5%)
Strand=Plus/Plus
Query 47244 AACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTG---TCTCTACTA- 47299
|||||||| |||||| | || ||||| || |||||| |||||||||| ||||| |
Sbjct 244408 AACGAGCTCATCTCGCGCGATGAAGGTCTTCACACCGACTTTGCCTGCCTTCTCTTTTCG 244467
Query 47300 CAACACTAGAGTCGATCAAAAGTTGGACGTGCCCACCGT--CAGCGACATGTTTGCCGAA 47357
|| | | || | ||| || | || |||||||| || | | || | ||||||
Sbjct 244468 CACCTCGAGCGCCGACCA------GCAC---CCCACCGTGTCACCCAGATTATCGCCGAA 244518
Query 47358 GCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATG 47417
||||||| || ||| || || | | || || |||||| || | || |||
Sbjct 244519 GCCGTCGAGATCGAGCAAGAATTCCTGACGGACGCCTTGCCCGTCGGCTTGATCGGCATG 244578
Query 47418 AACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTA 47477
||||| | ||| || |||||||||| || ||||| ||||| |||| || |||
Sbjct 244579 AACGCCACCCTCATGCGACAGTACATCGAGTTCGTCGCGGACCGATTGCTTGTCGCGCTC 244638
Query 47478 AAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTC 47537
| | |||| | ||| | ||||||| || ||||| |||||| | | || ||| |
Sbjct 244639 GGGAACGACAAGCTGTACAATGCCGAGAACCCGTTCGACTTTATGGAGATGATCTCGATG 244698
Query 47538 GAGGGCAAGACCAA 47551
||||||||||||||
Sbjct 244699 GAGGGCAAGACCAA 244712
>seq2
Length=1701455
Score = 86.0 bits (94), Expect = 6e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975
||| ||||| || | || ||||| ||||| | | |||| ||| || || || || ||
Sbjct 1353915 CGTCGACTCGTTCTCGATGTTGTAGTCGCCGACTGCGCGATGATCTTCGAGTTGCTTCCC 1353856
Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035
||| ||||||| |||||||| ||||| || ||||||||||||||| | | || |||
Sbjct 1353855 TGCGAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGGTCTTGACCTT 1353796
Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGA 127070
|| | | || ||||||| |||||| ||||
Sbjct 1353795 GACGTCGTAGATTGTGTCCGACGACTCGACCTCGA 1353761
>seq12
Length=324675
Score = 84.2 bits (92), Expect = 2e-11
Identities = 111/154 (72%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943
|| || ||||||| ||||| || | ||| | || || || |||||| ||||| ||
Sbjct 137513 GCGCCGCCGCGTAGGCGCAAGACGAGATGAAGGGTCGAATCCCTTTGAACCTTGTAGTCT 137454
Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003
| | |||||| || || ||||| || || ||| | || | |||||||| ||||||
Sbjct 137453 TCGAGCGTGCGGCTGTCCTCGAGCTGCTTCCCCGCGAACATGAGCCGCTGCTGGTCGGGA 137394
Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA 127037
|| ||||||||||||||| ||| || |||||
Sbjct 137393 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA 137360
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475500437430640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |