Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01-
27] 61 sequences; 20,750,089 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq11 122 1e-22
seq59 118 2e-21
>seq11
Length=389204
Score = 122 bits (134), Expect = 1e-22
Identities = 326/493 (66%), Gaps = 4/493 (1%)
Strand=Plus/Minus
Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898
|| ||| || ||||||| |||||| ||||| | | | | | || |||||||||||
Sbjct 263411 CTGGTCGACGGTGAACTTGATGGCGCCGACGGCGGCGCGGGTACGGAGGTAGTACATGCC 263352
Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958
||||| || ||||||| ||| ||||| | |||||| || | || | || | | ||
Sbjct 263351 CGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTGCGCCATGGTCGG 263292
Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGC 204018
| | ||| | ||| || ||||| ||||||||||| | | || || ||||
Sbjct 263291 CGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCTCCGCGGTCGGCGGA 263232
Query 204019 CATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTG-T 204077
| | ||| | | ||||||||| |||||||||||||||||| | | | | || | | |
Sbjct 263231 GAGGTCGATGACGACCTTCTGCGAGATCTCCCACACCGTCTTGTAGATG-CGCTTGAGCT 263173
Query 204078 GTTGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCTC 204136
| ||| | | | |||| || |||||||||||||| || || | | || ||
Sbjct 263172 CATCAGGGATA-CCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGTGTTCTTC 263114
Query 204137 GTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATC 204196
|| | || ||||| ||| || || || || | || |||||||| ||
Sbjct 263113 ATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTTGACGACT 263054
Query 204197 TGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCC 204256
|| || || |||| || || | |||||| | | |||| ||| | || |||||||||
Sbjct 263053 TGGAACTCGCCGGCGAGGACACGGCGGGTGTAGATGTTGGACGTGTACGGCTCGAACGCC 262994
Query 204257 TCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAG 204316
|||||| ||| | |||||| ||| || || ||||| || || || || |||
Sbjct 262993 TCGTTGAAGCCAAGGATCTGACTGGTCGACGCGGTCGGCATCGGCGCGCAGACGAGCGAG 262934
Query 204317 TTGCGCACACCGT 204329
||||| | ||||
Sbjct 262933 TTGCGGATGCCGT 262921
Score = 107 bits (118), Expect = 3e-18
Identities = 291/440 (66%), Gaps = 18/440 (4%)
Strand=Plus/Minus
Query 205262 ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCC 205321
|||||||||||||||||||| | | | ||| | ||||| || | |||||| || |||
Sbjct 261919 ATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCGCCC 261860
Query 205322 TGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCG 205381
||||| || ||| | | |||| | || || ||||| || | | ||||| | |
Sbjct 261859 TGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGAG 261800
Query 205382 GTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCA 205441
|||||||||| | |||| |||||| || | | |||| ||| | ||
Sbjct 261799 TAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGTGGATCGAGAGACCG 261740
Query 205442 ATCCCGCCAGAACACTTGGCGATCTGGGCGCAC-TCTTGCAGAGTGCTGTAGATGCCTGC 205500
|| ||||| | ||||| ||| | |||||| ||||| || ||| ||||||||| |
Sbjct 261739 ATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTTG-AGCGTGTCGTAGATGCCCTC 261681
Query 205501 GATGGAATCGTCCGCCAGTGTCACCAGATAGCACGAAGCCAGCTTGGCAAAGTTG----G 205556
||| || |||||| || || || || ||||||| | |||| || | || |
Sbjct 261680 GATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCT--GC--GGGTGCGGCG 261625
Query 205557 TGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAGCGCTTCTCGCTCAAACA----C 205612
|||| |||| ||||||||| || |||||| | ||| | ||||| |||
Sbjct 261624 TGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAG----TACCGCTCCGACATGAGG 261569
Query 205613 CTGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGTGAATACCTATGGCGATCCTCATG 205672
|||| ||||| | | ||| ||| | ||| |||||| || || | |||| | ||||
Sbjct 261568 TTGTACGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGACCGCGACACGCATG 261509
Query 205673 AAGAGGTGTTGAGGTCTCTC 205692
| | ||| || |||| |||
Sbjct 261508 AGCATGTGCTGCGGTCGCTC 261489
>seq59
Length=937750
Score = 118 bits (130), Expect = 2e-21
Identities = 214/312 (69%), Gaps = 11/312 (4%)
Strand=Plus/Plus
Query 159662 TTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTCTTCACGTGATAG 159721
||||||||||||||||| || || ||||| || |||| ||||||| | ||| |||
Sbjct 884371 TTGGTCTTGCCCTCCATCGAGATCATGTCCATAAAGTCGAACGGGTTCTCCTTGTGGTAG 884430
Query 159722 CGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCGATGTAGCTACAC 159781
|||| ||||| || ||||| | ||||||||| || |||||||| |||
Sbjct 884431 ATCTTCTCGTTGCCGAGTGCGATAAGCAATCGGTCTGCCACGAACTCGATGTACTGGCAC 884490
Query 159782 ATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTC 159841
|| | || | ||| || || | ||| | ||||| ||||| || | || ||||||| |
Sbjct 884491 ATGAGGTCGCTGTTCATGCCGATAAGCTTGACGGGCAGCGCCTCGGTGAGGAACTCCTGC 884550
Query 159842 TCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCG----TACCCCGGCTTGCC 159897
|| ||||||||||| ||| | || || ||| |||| | |||| ||
Sbjct 884551 TCGATCTCGACCGCCTCGCGAATGATGCGCTCGACCGTTTCGGGGTGAGGGCGGC--GCT 884608
Query 159898 CAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGA 159957
| | ||| | || |||||||| ||||||||| ||| || |||||||| || ||
Sbjct 884609 C-----GAGGTGCGAGAAGAGGAGGCAGGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGA 884663
Query 159958 GATGAACTCGTT 159969
||||| ||||||
Sbjct 884664 GATGAGCTCGTT 884675
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795154593694160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |