Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01- 27] 61 sequences; 20,750,089 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq11 122 1e-22 seq59 118 2e-21 >seq11 Length=389204 Score = 122 bits (134), Expect = 1e-22 Identities = 326/493 (66%), Gaps = 4/493 (1%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898 || ||| || ||||||| |||||| ||||| | | | | | || ||||||||||| Sbjct 263411 CTGGTCGACGGTGAACTTGATGGCGCCGACGGCGGCGCGGGTACGGAGGTAGTACATGCC 263352 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958 ||||| || ||||||| ||| ||||| | |||||| || | || | || | | || Sbjct 263351 CGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTGCGCCATGGTCGG 263292 Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGC 204018 | | ||| | ||| || ||||| ||||||||||| | | || || |||| Sbjct 263291 CGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTCGATGAACGCTCCGCGGTCGGCGGA 263232 Query 204019 CATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTG-T 204077 | | ||| | | ||||||||| |||||||||||||||||| | | | | || | | | Sbjct 263231 GAGGTCGATGACGACCTTCTGCGAGATCTCCCACACCGTCTTGTAGATG-CGCTTGAGCT 263173 Query 204078 GTTGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCTC 204136 | ||| | | | |||| || |||||||||||||| || || | | || || Sbjct 263172 CATCAGGGATA-CCGGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGTGTTCTTC 263114 Query 204137 GTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATC 204196 || | || ||||| ||| || || || || | || |||||||| || Sbjct 263113 ATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTTGACGACT 263054 Query 204197 TGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCC 204256 || || || |||| || || | |||||| | | |||| ||| | || ||||||||| Sbjct 263053 TGGAACTCGCCGGCGAGGACACGGCGGGTGTAGATGTTGGACGTGTACGGCTCGAACGCC 262994 Query 204257 TCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAG 204316 |||||| ||| | |||||| ||| || || ||||| || || || || ||| Sbjct 262993 TCGTTGAAGCCAAGGATCTGACTGGTCGACGCGGTCGGCATCGGCGCGCAGACGAGCGAG 262934 Query 204317 TTGCGCACACCGT 204329 ||||| | |||| Sbjct 262933 TTGCGGATGCCGT 262921 Score = 107 bits (118), Expect = 3e-18 Identities = 291/440 (66%), Gaps = 18/440 (4%) Strand=Plus/Minus Query 205262 ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCC 205321 |||||||||||||||||||| | | | ||| | ||||| || | |||||| || ||| Sbjct 261919 ATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCGCCC 261860 Query 205322 TGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCG 205381 ||||| || ||| | | |||| | || || ||||| || | | ||||| | | Sbjct 261859 TGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGAG 261800 Query 205382 GTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCA 205441 |||||||||| | |||| |||||| || | | |||| ||| | || Sbjct 261799 TAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGTGGATCGAGAGACCG 261740 Query 205442 ATCCCGCCAGAACACTTGGCGATCTGGGCGCAC-TCTTGCAGAGTGCTGTAGATGCCTGC 205500 || ||||| | ||||| ||| | |||||| ||||| || ||| ||||||||| | Sbjct 261739 ATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTTG-AGCGTGTCGTAGATGCCCTC 261681 Query 205501 GATGGAATCGTCCGCCAGTGTCACCAGATAGCACGAAGCCAGCTTGGCAAAGTTG----G 205556 ||| || |||||| || || || || ||||||| | |||| || | || | Sbjct 261680 GATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCT--GC--GGGTGCGGCG 261625 Query 205557 TGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAGCGCTTCTCGCTCAAACA----C 205612 |||| |||| ||||||||| || |||||| | ||| | ||||| ||| Sbjct 261624 TGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAG----TACCGCTCCGACATGAGG 261569 Query 205613 CTGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGTGAATACCTATGGCGATCCTCATG 205672 |||| ||||| | | ||| ||| | ||| |||||| || || | |||| | |||| Sbjct 261568 TTGTACGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGACCGCGACACGCATG 261509 Query 205673 AAGAGGTGTTGAGGTCTCTC 205692 | | ||| || |||| ||| Sbjct 261508 AGCATGTGCTGCGGTCGCTC 261489 >seq59 Length=937750 Score = 118 bits (130), Expect = 2e-21 Identities = 214/312 (69%), Gaps = 11/312 (4%) Strand=Plus/Plus Query 159662 TTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTCTTCACGTGATAG 159721 ||||||||||||||||| || || ||||| || |||| ||||||| | ||| ||| Sbjct 884371 TTGGTCTTGCCCTCCATCGAGATCATGTCCATAAAGTCGAACGGGTTCTCCTTGTGGTAG 884430 Query 159722 CGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCGATGTAGCTACAC 159781 |||| ||||| || ||||| | ||||||||| || |||||||| ||| Sbjct 884431 ATCTTCTCGTTGCCGAGTGCGATAAGCAATCGGTCTGCCACGAACTCGATGTACTGGCAC 884490 Query 159782 ATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTC 159841 || | || | ||| || || | ||| | ||||| ||||| || | || ||||||| | Sbjct 884491 ATGAGGTCGCTGTTCATGCCGATAAGCTTGACGGGCAGCGCCTCGGTGAGGAACTCCTGC 884550 Query 159842 TCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCG----TACCCCGGCTTGCC 159897 || ||||||||||| ||| | || || ||| |||| | |||| || Sbjct 884551 TCGATCTCGACCGCCTCGCGAATGATGCGCTCGACCGTTTCGGGGTGAGGGCGGC--GCT 884608 Query 159898 CAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGA 159957 | | ||| | || |||||||| ||||||||| ||| || |||||||| || || Sbjct 884609 C-----GAGGTGCGAGAAGAGGAGGCAGGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGA 884663 Query 159958 GATGAACTCGTT 159969 ||||| |||||| Sbjct 884664 GATGAGCTCGTT 884675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154593694160