Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01-
27] 61 sequences; 20,750,089 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq57 109 1e-18
seq59 98.7 2e-15
seq4 98.7 2e-15
seq1 95.1 3e-14
>seq57
Length=1280291
Score = 109 bits (120), Expect = 1e-18
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | ||| || ||||| || ||||||||||| |||| |||||| || | | |||
Sbjct 959605 CGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAAAGAGTA 959664
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| || |||||||| || |||||||| | ||||||||||| ||| || ||
Sbjct 959665 CGACCATCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATGCCC 959724
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||||||||| ||| || |||| ||||| | | || || || |
Sbjct 959725 TCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCAACCTCGAGG 959784
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || ||||| || || || || || ||
Sbjct 959785 GTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTG 959822
>seq59
Length=937750
Score = 98.7 bits (108), Expect = 2e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | ||| || |||||||| |||||||| || |||| |||||| || | | |||
Sbjct 936074 CGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTA 936015
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || || || |||||||| || ||||||||||||||||||||||| ||| || ||
Sbjct 936014 CGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCC 935955
Query 199529 TCTCGCTCCTGAATCTT 199545
|| ||||| |||||
Sbjct 935954 TCCTTGTCCTGGATCTT 935938
>seq4
Length=766227
Score = 98.7 bits (108), Expect = 2e-15
Identities = 113/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||| || ||||||||||| || | ||||||||||| | ||| | || ||
Sbjct 226647 AGGACGAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCC 226706
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| ||||| |||||||| ||||||||||| || || || || |||
Sbjct 226707 TCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 226766
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569
|| ||||| ||| ||| |||| |||||
Sbjct 226767 TGGATCTTGGCCTTGACGTTGTCGATCGTGTC 226798
>seq1
Length=1786154
Score = 95.1 bits (104), Expect = 3e-14
Identities = 87/110 (79%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | ||||| |||||||| ||||||||||| |||| ||||||||| | | |||
Sbjct 480082 CGAAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTG 480023
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518
| || || || |||||||| || |||||||| | ||||||||||| ||
Sbjct 480022 CGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGG 479973
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178920678599087
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |