Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01-
27] 61 sequences; 20,750,089 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq57 138 1e-27
seq1 123 3e-23
seq59 122 1e-22
seq4 109 6e-19
seq2 87.8 2e-12
>seq57
Length=1280291
Score = 138 bits (152), Expect = 1e-27
Identities = 168/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
||||||| | | ||||| ||| || || | || |||||| ||||| ||||| || |
Sbjct 959597 TGCCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCG 959656
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| ||||| || | || ||||||||||| || ||||| ||||||||||||||||||| |
Sbjct 959657 AAAGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAG 959716
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | || |||||||||| ||||| ||||| | | | |||||| ||| || |
Sbjct 959717 GGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCAA 959776
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| || | |||||||| ||||| || || || || || ||||| |||||
Sbjct 959777 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 959825
Score = 104 bits (114), Expect = 3e-17
Identities = 118/156 (76%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
|||||||| || ||||| || || ||||| |||| || |||||||| || |||||
Sbjct 958717 TCCTTTTGAATGTTGTAATCTTGAAGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAG 958776
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
||||||||||||||||||| ||| | || |||||||||| ||||| ||||| |||
Sbjct 958777 ATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTT 958835
Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
| | | ||||||| ||| || || || | |||||
Sbjct 958836 GTCGATCGTGTCGGACGACTCGACCTCGAGGGTGAT 958871
>seq1
Length=1786154
Score = 123 bits (136), Expect = 3e-23
Identities = 97/116 (84%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| || |||||||| |||| |||||||||||||| |||||
Sbjct 480053 CTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAA 479994
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517
||||||||||||||||||| || | || |||||||||| |||||| |||||
Sbjct 479993 GATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA 479938
>seq59
Length=937750
Score = 122 bits (134), Expect = 1e-22
Identities = 145/194 (75%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
|||| || | | ||| | |||||| |||| || |||||| || || || ||||||
Sbjct 936392 TGCCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGC 936333
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
|| |||||| |||| || ||||||||||||||||| ||||||||||||||||| | ||
Sbjct 936332 TGAGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCG 936273
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543
| | || |||||||||| ||||| ||||| ||| | | | ||||||| ||| ||
Sbjct 936272 GAATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCGGACGACTCG 936214
Query 46544 ACATCCACCGTGAT 46557
|| || | |||||
Sbjct 936213 ACCTCGAGGGTGAT 936200
Score = 118 bits (130), Expect = 1e-21
Identities = 118/153 (77%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
|||| || | | ||| | |||||| |||| || |||||| || || || ||||||
Sbjct 937554 TGCCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGC 937495
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
|| |||||| |||| || ||||||||||||||||| ||||||||||||||||| | ||
Sbjct 937494 TGAGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCG 937435
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517
| | || |||||||||| |||||| |||||
Sbjct 937434 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTGA 937402
Score = 96.9 bits (106), Expect = 4e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||| | | ||||| ||| || || | || ||| || ||||| ||||| || ||
Sbjct 936080 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 936021
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
||||| || |||| ||||||||||| || ||||| || | ||||||||||||| ||
Sbjct 936020 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGG 935961
Query 46487 ACGCTCTCCTTGTCCATGATCTT 46509
| || |||||||||| ||||||
Sbjct 935960 ATGCCCTCCTTGTCCTGGATCTT 935938
>seq4
Length=766227
Score = 109 bits (120), Expect = 6e-19
Identities = 120/157 (76%), Gaps = 2/157 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| || || |||||||| || |||||||| |||| ||||||||||||||||| ||
Sbjct 226667 CTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 226726
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||||||||| | || | || |||||||||| |||||| ||||| |||
Sbjct 226727 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 226785
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
| | | |||||| ||| || || || | |||||
Sbjct 226786 TGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGAT 226822
>seq2
Length=1701455
Score = 87.8 bits (96), Expect = 2e-12
Identities = 115/157 (73%), Gaps = 2/157 (1%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
||| || | ||| ||||||||| | | ||| | || ||||| ||||| || |||||
Sbjct 1353909 CTCGTTCTCGATGTTGTAGTCGCCGACTGCGCGATGATCTTCGAGTTGCTTCCCTGCGAA 1353850
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||||||||||||||||| ||| | || |||||||||| | |||| ||||| |||
Sbjct 1353849 GATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGGTCTTGACCTTGA-CGT 1353791
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
|| | ||||| ||| || || || | ||||||
Sbjct 1353790 CGTAGATTGTGTCCGACGACTCGACCTCGAGCGTGAT 1353754
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565237969005720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |