Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01- 27] 61 sequences; 20,750,089 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq57 138 1e-27 seq1 123 3e-23 seq59 122 1e-22 seq4 109 6e-19 seq2 87.8 2e-12 >seq57 Length=1280291 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||||| ||| || || | || |||||| ||||| ||||| || | Sbjct 959597 TGCCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCG 959656 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||||| || | || ||||||||||| || ||||| ||||||||||||||||||| | Sbjct 959657 AAAGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAG 959716 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||||| ||||| ||||| | | | |||||| ||| || | Sbjct 959717 GGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCAA 959776 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| ||||| || || || || || ||||| ||||| Sbjct 959777 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 959825 Score = 104 bits (114), Expect = 3e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 |||||||| || ||||| || || ||||| |||| || |||||||| || ||||| Sbjct 958717 TCCTTTTGAATGTTGTAATCTTGAAGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAG 958776 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||||||||||||||||| ||| | || |||||||||| ||||| ||||| ||| Sbjct 958777 ATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTT 958835 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 | | | ||||||| ||| || || || | ||||| Sbjct 958836 GTCGATCGTGTCGGACGACTCGACCTCGAGGGTGAT 958871 >seq1 Length=1786154 Score = 123 bits (136), Expect = 3e-23 Identities = 97/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || |||||||| |||| |||||||||||||| ||||| Sbjct 480053 CTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAA 479994 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 ||||||||||||||||||| || | || |||||||||| |||||| ||||| Sbjct 479993 GATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA 479938 >seq59 Length=937750 Score = 122 bits (134), Expect = 1e-22 Identities = 145/194 (75%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||| | |||||| |||| || |||||| || || || |||||| Sbjct 936392 TGCCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGC 936333 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || |||||| |||| || ||||||||||||||||| ||||||||||||||||| | || Sbjct 936332 TGAGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCG 936273 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | || |||||||||| ||||| ||||| ||| | | | ||||||| ||| || Sbjct 936272 GAATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCGGACGACTCG 936214 Query 46544 ACATCCACCGTGAT 46557 || || | ||||| Sbjct 936213 ACCTCGAGGGTGAT 936200 Score = 118 bits (130), Expect = 1e-21 Identities = 118/153 (77%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||| | |||||| |||| || |||||| || || || |||||| Sbjct 937554 TGCCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGC 937495 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || |||||| |||| || ||||||||||||||||| ||||||||||||||||| | || Sbjct 937494 TGAGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCG 937435 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 | | || |||||||||| |||||| ||||| Sbjct 937434 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTGA 937402 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||| ||| || || | || ||| || ||||| ||||| || || Sbjct 936080 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 936021 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || |||| ||||||||||| || ||||| || | ||||||||||||| || Sbjct 936020 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGG 935961 Query 46487 ACGCTCTCCTTGTCCATGATCTT 46509 | || |||||||||| |||||| Sbjct 935960 ATGCCCTCCTTGTCCTGGATCTT 935938 >seq4 Length=766227 Score = 109 bits (120), Expect = 6e-19 Identities = 120/157 (76%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| || |||||||| |||| ||||||||||||||||| || Sbjct 226667 CTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 226726 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||| | || | || |||||||||| |||||| ||||| ||| Sbjct 226727 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 226785 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 | | | |||||| ||| || || || | ||||| Sbjct 226786 TGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGAT 226822 >seq2 Length=1701455 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || | ||| ||||||||| | | ||| | || ||||| ||||| || ||||| Sbjct 1353909 CTCGTTCTCGATGTTGTAGTCGCCGACTGCGCGATGATCTTCGAGTTGCTTCCCTGCGAA 1353850 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||||||||||||||||| ||| | || |||||||||| | |||| ||||| ||| Sbjct 1353849 GATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGGTCTTGACCTTGA-CGT 1353791 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 || | ||||| ||| || || || | |||||| Sbjct 1353790 CGTAGATTGTGTCCGACGACTCGACCTCGAGCGTGAT 1353754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237969005720