Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01- 27] 61 sequences; 20,750,089 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq11 152 6e-32 seq2 93.3 5e-14 >seq11 Length=389204 Score = 152 bits (168), Expect = 6e-32 Identities = 486/741 (66%), Gaps = 21/741 (3%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| |||||| |||| ||||| || || || ||||| | Sbjct 261495 CCGCAGCACATGCTCATGCGTGTCGCGGTCGGCATCCACGGCGACGACATTGAGCGCGCG 261554 Query 111672 TTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| ||| || ||||| | |||| || | ||||| | || || ||||| Sbjct 261555 ATCGAGACGTACAACCTCATGTCGGAGCGGTACTTT-ACGCACGCCTCGCCGACGCTCTT 261613 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||| || || || || || | || || ||||| | | | ||||| || Sbjct 261614 CAACGCCGGCACGCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAAGGACGA 261673 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || ||| | ||||| |||| ||| |||| || || | ||||| ||| ||| || Sbjct 261674 CTCGATCGAGGGCATCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACGGCCGG 261733 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTAT-TAGA-GGTACA 111908 || ||||| | ||||| | || | || | | | |||||| | | || || Sbjct 261734 CGGCATCGGTCTCTCGATCCACAACATCCGCGCGACC--GGCTCGTACATCGCCGGCACG 261791 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 || || | || | || || || || ||||| ||||| | ||| ||| |||||||| Sbjct 261792 AACGGCTACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACCGCGCGCTAC 261851 Query 111969 GTAAACCAAGCTGGGCGTCG-CAAG------GGATCTATCGCAGTCTATCTTGAGCCATG 112021 || |||| ||||| | |||| || | |||| |||| || ||||| || Sbjct 261852 GTCGACCA----GGGCGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGTG 261907 Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCG 112081 |||||| || ||| | |||||||| || | || ||||| || | ||||||| || Sbjct 261908 GCACGCCGACATCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCG 261967 Query 112082 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 112141 ||||| | |||| || ||||||||||| || ||||||||| || | || ||| | Sbjct 261968 CGCGCGCGACTTGTTCTTTGCCCTCTGGATTCCCGACCTCTTCATGGAGCGTGTCGAGCA 262027 Query 112142 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGG 112201 || ||| | ||| | ||||| || || | | |||||||||| ||| ||| | | || Sbjct 262028 GAACGGCGACTGGCCCCTCTTCTGCCCTGCCGAGGCACCCGGCCTCCACGAGGTCTACGG 262087 Query 112202 TGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCG-ACGG 112260 || ||||| | | || | | ||||| ||| | || |||| || | ||| || Sbjct 262088 CGACGAGTTCAAGGAGCTGTTCGAGAAGTATGAGAAGGAGGGTCGCGCCA-AGCGCACCA 262146 Query 112261 TGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 112319 | || || | || | | ||| | || || ||| || | || |||||| || | || Sbjct 262147 TTCCCGC-CCAGAAGCTCTGGTACGCCATCCTCGAGGCCCAGGTCGAGACGGGCAACCCC 262205 Query 112320 TATATGCTTTACAAAGACGCC 112340 | ||||| ||||| |||||| Sbjct 262206 TTCATGCTCTACAAGGACGCC 262226 >seq2 Length=1701455 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 176911 CTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAAC 176970 ||| || || || |||||||||||||||| |||||||| || || | |||||||| || Sbjct 1666017 CTTTCCGCGGAGCGGGAAGACACCGTAGTTGTCGCGACCGACGACGGCGAGACCCGAGAC 1666076 Query 176971 CGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTACACTTG 177019 ||||||| || || || || ||||| |||| |||||| || |||||| Sbjct 1666077 GGCGAGCGCCTTGGCCGAGTCTCCCTCGGTCAGGATGAGCGTGCACTTG 1666125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741926683920