Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01-
27] 61 sequences; 20,750,089 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq57 138 3e-27
seq4 118 2e-21
seq59 107 4e-18
seq12 84.2 5e-11
seq1 84.2 5e-11
>seq57
Length=1280291
Score = 138 bits (152), Expect = 3e-27
Identities = 156/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| |||||||| || ||||| || || || |||||||| | |||||| | ||||| |||
Sbjct 959617 ACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAAAGAGTACGACCATCCTCG 959676
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| | || || ||||| ||||| ||||| || ||||| |||
Sbjct 959677 AGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGA 959736
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || |||||| || || || |||||||| || || || ||||| | |||||
Sbjct 959737 ATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCAACCTCGAGGGTGATGGTCTTG 959796
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | || || ||||| | |||||
Sbjct 959797 CCGGTGAGGGTCTTGACGAAGATCTGCAT 959825
>seq4
Length=766227
Score = 118 bits (130), Expect = 2e-21
Identities = 128/170 (75%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| |||||||| || ||||| || ||||| ||||| || | |||||| | || || |||
Sbjct 226650 ACGAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCG 226709
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| || || || ||||| || || ||||| || ||||| ||
Sbjct 226710 AGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 226769
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101
|| || ||||||||| || || |||||||| || || || |||||
Sbjct 226770 ATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGT 226819
>seq59
Length=937750
Score = 107 bits (118), Expect = 4e-18
Identities = 115/152 (76%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || || ||||| || ||||| || || ||| || || | ||| || ||
Sbjct 937534 ACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTGAGCGTGCGCCCGTCCTCA 937475
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| | || || ||||| || |||||||| || ||||| ||
Sbjct 937474 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGG 937415
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGA 195083
|| || ||||||||| || |||||||||||
Sbjct 937414 ATCTTGGCCTTGACGTTGTCGATGGTGTCCGA 937383
Score = 104 bits (114), Expect = 5e-17
Identities = 98/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || || |||||||| || || |||||||| | |||||| | || || |||
Sbjct 936062 ACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCGTCCTCG 936003
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| || || || ||||| ||||| ||||| || ||||| ||
Sbjct 936002 AGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGG 935943
Query 195052 ATTTT 195056
|| ||
Sbjct 935942 ATCTT 935938
>seq12
Length=324675
Score = 84.2 bits (92), Expect = 5e-11
Identities = 109/151 (72%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987
||| || || ||||| || || || |||||| ||||| || | || || | | ||
Sbjct 137496 CAAGACGAGATGAAGGGTCGAATCCCTTTGAACCTTGTAGTCTTCGAGCGTGCGGCTGTC 137437
Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047
||||||||||| || ||||| || || || || ||||| ||||| ||||| || |||||
Sbjct 137436 CTCGAGCTGCTTCCCCGCGAACATGAGCCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTC 137377
Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTG 195078
|| || || ||||||| | || || |||
Sbjct 137376 CTGGATCTTGGCCTTGACGATGTCGATCGTG 137346
>seq1
Length=1786154
Score = 84.2 bits (92), Expect = 5e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || || ||||| || || || ||||| || | ||||| | || || |||
Sbjct 480070 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCGTCCTCG 480011
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| | || || ||||| || || ||||| || ||||| ||
Sbjct 480010 AGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 479951
Query 195052 ATTTTTTGCTTGAC 195065
|| || ||||||
Sbjct 479950 ATCTTGGCCTTGAC 479937
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109480732870787
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |