Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01- 27] 61 sequences; 20,750,089 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq11 152 1e-31 seq59 136 7e-27 seq15 107 4e-18 >seq11 Length=389204 Score = 152 bits (168), Expect = 1e-31 Identities = 530/817 (65%), Gaps = 24/817 (3%) Strand=Plus/Minus Query 213599 GTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTAT 213658 |||||| | ||||||||||||||| ||||| || ||||| | ||||| | | || || Sbjct 262232 GTTGGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGAT 262173 Query 213659 CTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTA 213718 | |||||| | | ||| | ||| || | || | | ||| || Sbjct 262172 GGCGTACCAGAGCTTCTGGGCGGGAATGGTGCGCTTGGCGCGACCCTCCTT---CTCATA 262116 Query 213719 CTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGC 213778 || ||| | ||||| ||||| |||| ||| ||||| || || || || || Sbjct 262115 CTTCTCGAACAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCGGC 262056 Query 213779 GGGACACATGAGGCTCCAGTCCCCGTCAT-CTCTGACTCTCTGCATGAACAGGTCCGGGA 213837 || || | |||| |||||| |||| | ||| ||| | || |||||| ||||| || | Sbjct 262055 AGGGCAGAAGAGGGGCCAGTCGCCGTTCTGCTC-GACACGCTCCATGAAGAGGTCGGGAA 261997 Query 213838 CCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCA 213897 ||| || || ||||| ||| | | | ||| ||| || ||| ||||| | Sbjct 261996 TCCAGAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGA 261937 Query 213898 GATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG 213957 | || || || || |||||||| |||||||||||||| | ||||||||| || ||||||| Sbjct 261936 GGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCG 261877 Query 213958 ---GCCTCTTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGG 214014 || | |||||||||||||| || | || ||||| | | ||| || | || Sbjct 261876 GGCGCTTGTTGCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGG 261817 Query 214015 GTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGT 214074 | | | ||||| || | ||||| || || || || |||||||||| || | | || Sbjct 261816 GGATGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGT 261757 Query 214075 TGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAG 214134 || || ||||| || ||||| ||||| ||||||||| | ||||| | | | | Sbjct 261756 TGTGGATCGAGAGACCGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCG 261697 Query 214135 TCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCT 214194 | || |||||| | || ||| || | | | | | |||||| |||||||| Sbjct 261696 TGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCT 261637 Query 214195 GGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAG 214254 | || | || ||| | |||||| ||||| || ||| || | | || | | Sbjct 261636 GCGGGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACCGCTCCG 261577 Query 214255 AGAGGAGCCTGTAGGTCTCCAGGACTGAGGG---GATGTCGTGCTTGTGGATCTGTAGAG 214311 | | ||| |||| ||||| || | | | ||||||| ||||| || || Sbjct 261576 ACATGAGGTTGTACGTCTC---GATCGCGCGCTCAATGTCGTCGCCGTGGA--TGCCGAC 261522 Query 214312 CGC-AC-CTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTTTGGGGCC---CTTGAG 214366 ||| || | ||| ||||||||||| || | ||| || | ||| | | ||| Sbjct 261521 CGCGACACGCATGAGCATGTGCTGCGGTCGCTC---GGCCACCTTGCCGTCGAGGCGGAG 261465 Query 214367 CAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAG 214403 |||||| || ||||| || |||||||| || |||||| Sbjct 261464 CAGGTACGACCGCTCGAGCGTCTTGAAGCCGAAGTAG 261428 >seq59 Length=937750 Score = 136 bits (150), Expect = 7e-27 Identities = 137/176 (78%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 48178 GGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGA 48237 ||||||| ||| || ||||| | || | || ||||||||||| || | |||||| || Sbjct 884774 GGAGAAGGTGAGTCCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAACGA 884833 Query 48238 GCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGA--AAGAA 48295 ||| ||||||||||||||||| || || ||||||||| ||| | ||| |||| | | | Sbjct 884834 GCCGGAGAAGAAGATGCCCTCGACGGCGGCGAACGCGACGAGGCGCTCGCCGAAGACGGA 884893 Query 48296 GCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 ||| || ||| |||||||| | |||||||| || |||||||||| |||||| || Sbjct 884894 GCG--CTCGTCCGAGATCCAAGTGAGCGCCCACTCGGCCTTCTTCTGGATGCAGGG 884947 >seq15 Length=278969 Score = 107 bits (118), Expect = 4e-18 Identities = 215/314 (68%), Gaps = 15/314 (5%) Strand=Plus/Minus Query 47870 TTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAGAGGAAGGGGTTGGGTGTGTTATAC 47929 || ||||| ||||||| |||||| ||||||| ||| ||| ||||| | || ||| Sbjct 244712 TTGGTCTTGCCCTCCATCGAGATCATCTCCATAAAGTCGAACGGGTTCTCGGCATTGTAC 244653 Query 47930 ACCCGTGTCAGGCCC-ATCTGTTCCAGCAGGTGATCCGCGACGTACTCGATGTATTTTGA 47988 | | |||| ||| | | | |||| | ||||||||| |||||||||| | | Sbjct 244652 AGCT-TGTCGTTCCCGAGCGCGACAAGCAATCGGTCCGCGACGAACTCGATGTACTGTCG 244594 Query 47989 CATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTT 48048 |||||||||| ||||||||| || | | |||||||| || | || || || || | Sbjct 244593 CATGAGGGTGGCGTTCATGCCGATCAAGCCGACGGGCAAGGCGTCCGTCAGGAATTCTTG 244534 Query 48049 CTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGGTTTGTT--G 48106 ||| |||| |||||||| | | |||||| | || ||| || || || | | Sbjct 244533 CTCGATCTCGACGGCTTCGGCGATAATCTGGGTGACACGG-----TGGGGTGCTGGTCGG 244479 Query 48107 CGC---AGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGG 48163 ||| |||||| | | |||| | |||||||||||| |||| | ||||| || || Sbjct 244478 CGCTCGAGGTGC---GAAAAGAGAAGGCAGGCAAAGTCGGTGTGAAGACCTTCATCGCGC 244422 Query 48164 CTGATGAGCACGTT 48177 ||||||| |||| Sbjct 244421 GAGATGAGCTCGTT 244408 Score = 96.9 bits (106), Expect = 6e-15 Identities = 122/164 (74%), Gaps = 4/164 (2%) Strand=Plus/Minus Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 ||| ||||| | |||| || ||||||||||| || | ||||| ||||| |||||||| Sbjct 244337 ACCGGGCATCAAGCCCCGCTTCTTGAGCCAGAAGATCGAGGCGAACGAGCCGGAGAAGAA 244278 Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCG-AAAGA-AGCGTTCTTGTCT 48307 ||||||||| || || ||||| ||| || || |||| ||||| ||| ||| Sbjct 244277 GATGCCCTCGACAGCGGCGAAAGCGACCAG--TCGTTCCGCAAAGACGGCGCCAGGGTCC 244220 Query 48308 GAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 |||||||| ||||||||| || |||||||| |||||| || Sbjct 244219 GAGATCCATCGAAGCGCCCACTCGGCCTTCTTGGCGATGCAGGG 244176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532089706240