Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01-
27] 61 sequences; 20,750,089 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq12 264 1e-65
seq57 179 5e-40
seq59 150 2e-31
seq4 150 2e-31
seq24 102 1e-16
>seq12
Length=324675
Score = 264 bits (292), Expect = 1e-65
Identities = 871/1343 (65%), Gaps = 21/1343 (2%)
Strand=Plus/Plus
Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538
|| ||||||||||| ||||| || || || ||||||||| | || | ||||| |
Sbjct 215230 ACCGTCTTTGACGCCAAGCGCCTCATCGGACGCAAGTTTGCCGACGCCGAGGTCCAGTCC 215289
Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTC--CCGGTGTGGCTGATAAGCCTATGATTA 195596
|| || ||| ||||| | | | ||| | || | || ||| ||||| || ||
Sbjct 215290 GACATGAAGCACTGGCCGT-TCAAGGTCATCGACAAGTCGGGC----AAGCCCATCATCT 215344
Query 195597 ATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGT 195656
|| || | | || ||| |||| | || | ||||| || || ||||| |||||
Sbjct 215345 CGGTCGAGTACAAGGGCGAGCAGAAGGAGTTCACGCCCGAGGAGATCTCGTCGATGGTCC 215404
Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTG 195716
| | |||||||||||||| || || | | | | || || || | || || |
Sbjct 215405 TCCTCAAGATGAAGGAGACGGCCGAGGCCTACCTCGGCGGCACCGTCGCCAACGCCGTCG 215464
Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCT- 195775
| || || || || ||||||| || || || || ||||| || |||||||| | |||
Sbjct 215465 TCACCGTCCCCGCCTACTTCAACGACTCGCAGCGCCAGGCCACCAAGGACGC--CGGCTT 215522
Query 195776 -ATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTA 195834
|| |||| || ||| || | || ||||| || || || || || || || || ||
Sbjct 215523 GATCTCGGGCCTCAACGTCCTCCGCATCATCAACGAGCCCACCGCCGCCGCCATCGCGTA 215582
Query 195835 TGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGG 195894
|| || |||||||| || | || || || || | ||||| || | || || ||
Sbjct 215583 CGGCCTCGACAAGAAGTCCGAGGGCGAGAAGAACGTCCTCATCTTCGACTTGGGAGGCGG 215642
Query 195895 TACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGC 195954
||||| || ||||| || |||| || || | || || ||||| || ||||| || ||
Sbjct 215643 CACGTTCGACGTCTCGCTCCTCACGATCGAGGAGGGCATCTTCGAGGTCAAGGCCACCGC 215702
Query 195955 TGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTGTCTG 196013
|| || || || || || || || || || || || || || || |||||| |
Sbjct 215703 CGGCGACACCCACCTCGGCGGCGAGGACTTTGACAACCGCCTCGTCAACCACTTTGTC-G 215761
Query 196014 ATGAGTTCCGTCGAAAGAATAAGAAAGATATTTC-TGGAAATCCTAGGGCTCTTCGTCGG 196072
|||||| || ||||| ||||| || | || | ||| || | || || || ||
Sbjct 215762 CCGAGTTCAAGCGCAAGAACAAGAAGGACCTCTCGTCGAACGCC-CGCGCCCTCCGCCGC 215820
Query 196073 CTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTT 196132
|| | || || || || || ||||| || || ||||| || | || || || | | |
Sbjct 215821 CTCCGCACCGCCTGCGAGCGCGCCAAGCGCACCCTCTCGTCGGCCGCCCAGACCACGATC 215880
Query 196133 GAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTT 196192
||||| || ||| | || || || || |||||||| || | || ||||| || || ||
Sbjct 215881 GAGATCGACTCGCTCTTCGAGGGCATCGACTTCTACACCTCGATCACCCGCGCCCGCTTC 215940
Query 196193 GAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGT 196252
|| ||| | | || | || | | ||||| || || || | || || ||
Sbjct 215941 GAGGAGCTCTGCCAGGACCTCTTCCGCTCGACCATGGAGCCCGTCGAGAAGGTCCTCCGC 216000
Query 196253 GACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGT 196312
||| | ||||| || ||| ||| | || |||||||| || || || || ||||||
Sbjct 216001 GACTCGAAGATTGACAAGCAGTCGGTCCACGAGATTGTCCTCGTCGGCGGCTCGACCCGT 216060
Query 196313 ATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACG 196372
|| ||| | || || | | || ||||||| || || ||||| ||
Sbjct 216061 ATCCCGCGTGTCCAGAAGCTCGTCTCCGACTTCTTCGGCGGCAAGGAGCCCAACAAGTCG 216120
Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGT 196432
||||||||||| || || || || || || || ||||| |||||||| || ||| | ||
Sbjct 216121 ATCAACCCGGACGAGGCCGTCGCGTACGGCGCCGCCGTCCAGGCTGCCATCCTCACCGG- 216179
Query 196433 GTTGACA---ATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTG 196489
|||| | || ||| || || || || || || || || || | ||
Sbjct 216180 --CGACACGTCCGAGAAGACCCAGGACCTCCTCCTCCTCGACGTCGCCCCTCTCTCGACC 216237
Query 196490 GGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCG 196549
||| | || || || || ||||| ||||| || | || | ||||| || | |||
Sbjct 216238 GGTATCGAGACCGCCGGCGGTGTCATGACCAAGCTCATCCCGCGCAACACGACCGTCCCG 216297
Query 196550 ACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAA 196609
|| |||||| | |||| || || || |||| || || || || || || ||
Sbjct 216298 ACCAAGAAGTCGGAGATCTTCTCGACCTACGCCGACAACCAGCCGGGCGTCTTGATCCAG 216357
Query 196610 GTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTG 196669
|| || ||||| || ||| |||| | ||||| ||| | || || || | || || |
Sbjct 216358 GTCTACGAAGGGGAGCGCGCCCGCACCAAGGACAACAACCTCCTCGGCAAGTTTGAGCTC 216417
Query 196670 ACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGAC 196729
|||| || || | || ||| | || || || ||||| | || |||||| || |||
Sbjct 216418 TCGGGCATCCCCCCCGCGCCCCGCGGCGTCCCCCAGATCGAGGTCACCTTCGACATCGAC 216477
Query 196730 GCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATT 196789
|| || || || || |||||| | ||| ||||||| | | ||||| || | |||||
Sbjct 216478 GCCAACGGCATCCTCAACGTCTCGGCTTCGGACAAGACCACCGGCAAGTCGAACAAGATC 216537
Query 196790 GTGATTACCAATGACAAGGGGCG 196812
|| ||||| ||||||| |||
Sbjct 216538 ACCATCACCAACGACAAGGTGCG 216560
>seq57
Length=1280291
Score = 179 bits (198), Expect = 5e-40
Identities = 167/212 (79%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| ||||| || || ||||| || || || || |||||||||||||||||||||||
Sbjct 959825 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTCG 959766
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| ||||| || |||| ||||||||||| || ||||| ||||| || ||||| |||
Sbjct 959765 GACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 959706
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041
|| || | || || || || || ||||| || ||||| ||||| || | |||||||||
Sbjct 959705 CAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAAC 959646
Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073
| || |||||||| || || ||||| || ||
Sbjct 959645 ATCCAGAAGGAGTCGACCCTTCACCTCGTGCT 959614
Score = 165 bits (182), Expect = 1e-35
Identities = 151/191 (79%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 171898 ATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGAT 171957
|||||||||||||| |||||||| ||||| ||||| ||| |||| ||||||||||| ||
Sbjct 958871 ATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGAC 958812
Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGAT 172017
||||| ||||| || ||||| ||||| || | || || || || || |||||||| ||
Sbjct 958811 AAGGAGGGCATCCCGCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTTGAGGAC 958752
Query 172018 GGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGG 172077
||||| || || ||||||||| |||||||||| || || || ||||| ||| | |||
Sbjct 958751 GGACGCACGCTTCAAGATTACAACATTCAAAAGGAATCGACCCTGCACCTCGTTTTGAGG 958692
Query 172078 CTTCGGGGTGG 172088
| || |||||
Sbjct 958691 TTGCGCGGTGG 958681
>seq59
Length=937750
Score = 150 bits (166), Expect = 2e-31
Identities = 148/191 (77%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 171898 ATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGAT 171957
|||||||||||||| |||||||| ||||| ||||| ||| |||| ||||||||||| ||
Sbjct 936200 ATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGAC 936259
Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGAT 172017
||||| |||||||| || || ||||| || | || || || || || |||||||| ||
Sbjct 936260 AAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGAC 936319
Query 172018 GGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGG 172077
|| || || ||| || || ||| |||| |||||||| || || ||||| || || |
Sbjct 936320 GGGCGCACGCTCAGCGACTATAACATTCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGT 936379
Query 172078 CTTCGGGGTGG 172088
|| || |||||
Sbjct 936380 CTCCGCGGTGG 936390
>seq4
Length=766227
Score = 150 bits (166), Expect = 2e-31
Identities = 139/176 (79%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 171898 ATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGAT 171957
|||||||||||||| |||||||| ||||| ||||| ||| |||| |||||||| || ||
Sbjct 226822 ATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACGTCAAGGCCAAGATCCAGGAC 226763
Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGAT 172017
||||| ||||| || || || ||||| || || || ||||| || || ||||| || ||
Sbjct 226762 AAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGAC 226703
Query 172018 GGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073
|| || || || |||| |||||| |||| |||||||| || || ||||| || ||
Sbjct 226702 GGCCGCACTCTTTCTGACTACAACATTCAGAAGGAGTCGACCCTTCACCTCGTCCT 226647
>seq24
Length=1461436
Score = 102 bits (112), Expect = 1e-16
Identities = 273/404 (68%), Gaps = 15/404 (4%)
Strand=Plus/Minus
Query 198459 GTTGAGGGTATCGACTCAGCTAAGGATGAGCTCGAGGAGATTGTTGATTTTCTTAAAAAC 198518
|||| || || ||| || ||||| ||| || |||| | || | || || || |||
Sbjct 267419 GTTGCCGGAATGGACGAGGCCAAGGAGGAGATCATGGAGTTCGTCAAGTTCCTCAAGAAC 267360
Query 198519 CCCGAAAAGTACTATGGAAGTGGTGCCCGAATCCCACGTGGTGCTCTTCTCGCCGGTGCC 198578
|| ||| | ||| | | |||||| || || || || || | ||| |||| |
Sbjct 267359 CCGGAACACTACGAGCGCCTCGGTGCCAAGATTCCCCGCGGCGCCATCCTCTCCGGCCCT 267300
Query 198579 CCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCGGGTGAATCGAGTGTCCCCTTT 198638
|| ||||| || || || || || || || | ||| || ||| | | ||||||||
Sbjct 267299 CCCGGTACCGGCAAGACGCTCCTCGCCAAGGCGACCGCAGGCGAAGCCGGCGTCCCCTTC 267240
Query 198639 CT-TCAGTGCTCCG-CGGCGAGTTTCATCGAGATGTTCGTTGGTGTTGGTGCTAAGCGCG 198696
|| || || ||||| | |||||| | ||||||||||||| || || ||||| | || |
Sbjct 267239 CTCTCCGT-CTCCGGCTCCGAGTT-CGTCGAGATGTTCGTCGGAGTCGGTGCGAGCCGTG 267182
Query 198697 TCCGGGAACTCTTTGAGCAAGCACGTGAA-AATCAACCATGTATCATCTTCATTGATGAG 198755
|||| || ||||| | || || | ||| || || || ||||||||||| || |||
Sbjct 267181 TCCGAGACCTCTTCGCCCAGGC-CAAGAAGAACGCGCCGTGCATCATCTTCATCGACGAG 267123
Query 198756 ATTGACGCTGTTGGTAAGAAGCGTGGTGG-AACTAC-TACACCT----GGTAATGATGAG 198809
|||||||| | || | |||| | |||| || | ||| | || || || |||
Sbjct 267122 ATTGACGCGATCGG--AAAAGC-TCGTGGCAAGGGCGGACAGTTTGGCGGCAACGACGAG 267066
Query 198810 CGTGAGCAGACGATTAACCAGCTTCTCACTGAGATGGATGGTTT 198853
|| ||| ||| | |||||||| ||| |||||||| |||||
Sbjct 267065 CGCGAGTCGACCCTCAACCAGCTCCTCGTCGAGATGGACGGTTT 267022
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657861898379920
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