Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01- 27] 61 sequences; 20,750,089 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq11 255 6e-63 seq57 143 3e-29 seq59 114 1e-20 seq12 102 8e-17 seq4 96.9 3e-15 seq1 93.3 4e-14 >seq11 Length=389204 Score = 255 bits (282), Expect = 6e-63 Identities = 524/764 (69%), Gaps = 19/764 (2%) Strand=Plus/Minus Query 148932 CTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACT 148991 |||||| ||||||||||| |||||| | || ||| || || ||||| | || | Sbjct 262234 CTGTTGGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGG 262175 Query 148992 ATGAACCGATGCAGGTC--CTGCGCGCGCACT-TGCTGCTCGTAGCGACCCTCCTGCTCG 149048 ||| || ||| | ||| ||| | | ||| ||| | ||||||||||| ||| Sbjct 262174 ATGG--CGTACCAGAGCTTCTGGGCGGGAATGGTGC-GCTTGGCGCGACCCTCCTTCTCA 262118 Query 149049 TATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTG 149108 || ||||| || |||| | ||||||||| |||| ||| ||||| || | Sbjct 262117 TACTTCTCGAACAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCG 262058 Query 149109 TGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGC 149168 ||||| | ||| | ||| |||||| | | || |||| ||| || || ||||| Sbjct 262057 GCAGGGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGA 261998 Query 149169 ACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGC 149228 | |||||| || | | | ||||||||| | || || ||| ||| ||| Sbjct 261997 ATCCAGAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGG 261938 Query 149229 AGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCC 149288 |||| ||| | ||| ||||| |||||||||||||| | ||| | |||| ||||||| Sbjct 261937 AGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCC 261878 Query 149289 TTGCGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATA 149345 ||||||| |||||||||||||||| |||| | ||||||| |||| || | ||| Sbjct 261877 GGGCGCTTGTTGCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATG 261818 Query 149346 GGTTCAATGCCACTGGCAGT-GCCGTTAGTAGAGCTAATG--CGACTGCCGCGCGCTCGC 149402 || ||||| | | ||| |||||| || | ||| ||| |||| ||| || Sbjct 261817 GGGATGATGCCGTTCG-AGTAGCCGTTCGTGCCGGCGATGTACGA--GCCGGTCGCGCGG 261761 Query 149403 ACTTTGTGCACGTTGACGCCGATGCCGCCG-CCGTACTTTGAGATGGCCGCGCA-GTCGC 149460 | ||||| | || |||||||||||| |||| ||| |||||| |||||| ||| Sbjct 261760 ATGTTGTGGATCGAGAGACCGATGCCGCCGGCCGT-CTTGGAGATGAGCGCGCACGTCTT 261702 Query 149461 CGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGC 149520 |||||| ||||||||||||||| |||| |||||| || | || |||||||| Sbjct 261701 -GAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACG 261643 Query 149521 ACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATT 149580 | | ||||| |||||||||| ||| | || || |||||| ||||| || Sbjct 261642 AGAGCTGCGGGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACC 261583 Query 149581 TCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTA 149640 || ||| | | ||||| ||||| | |||| || ||||| ||||| |||||||| | Sbjct 261582 GCTCCGACATGAGGTTGTACGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGA 261523 Query 149641 TGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTG 149684 ||||| ||||| ||||| |||||||||||||| ||||| ||| Sbjct 261522 CCGCGACACGCATGAGCATGTGCTGCGGTCGCTCGGCCACCTTG 261479 Score = 159 bits (176), Expect = 3e-34 Identities = 366/549 (67%), Gaps = 8/549 (1%) Strand=Plus/Minus Query 147951 GTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGAC 148010 || || || |||||||||||||||||||| ||| | ||| ||||| ||||| |||| Sbjct 263371 GTACGGAGGTAGTACATGCCCGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATCGAC 263312 Query 148011 GACATGAGCGTGTAC----GTCGGGTGCGGCACAAACAGATTAAACGACTGGCTCTGGTC 148066 | ||||| || | ||||| || | | || | |||||| |||||| Sbjct 263311 G---TGAGC-TGCGCCATGGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTGGTC 263256 Query 148067 AATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCATCTCCCAGGC 148126 |||||||| || ||||| |||| | || |||| ||| | |||||||| | Sbjct 263255 GATGAACGCTCCGCGGTCGGCGGAGAGGTCGATGACGACCTTCTGCGAGATCTCCCACAC 263196 Query 148127 CGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCG 148186 ||||||||| | ||||||| | ||| || || ||| || | ||| | ||||||| Sbjct 263195 CGTCTTGTAGATGCGCTTGAGCTCATCAGGGATACCGGGGACGTTCTGGATCGAGCCGTT 263136 Query 148187 GTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATC 148246 |||||| | ||| || ||| |||| | | ||| | | |||| ||||| Sbjct 263135 GTGCGCGATGATCGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTCGCG 263076 Query 148247 GATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTT 148306 || || | | || || || || |||||||||||||| || || || || | ||| Sbjct 263075 GAGGAGCCAGGGGTTGACGACTTGGAACTCGCCGGCGAGGACACGGCGGGTGTAGATGTT 263016 Query 148307 GCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGG 148366 | ||| |||| || |||| ||||||| ||| | ||||| ||||| || || || Sbjct 263015 GGACGTGTACGGCTCGAACGCCTCGTTGAAGCCAAGGATCTGACTGGTCGACGCGGTCGG 262956 Query 148367 CATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGC 148426 ||| ||| | ||||||||||| | ||| | | || || ||||| | Sbjct 262955 CATCGGCGCGCAGACGAGCGAGTTGCGGATGCCGTGCTGCGCAATCTTCTCCTTCAACTC 262896 Query 148427 CGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCG 148486 ||||||||||| || || ||| || |||||||||| ||||||||||| | |||| | Sbjct 262895 GGCCCAGTCCCACAGGTCCGTCGGCGTGACGTTCCACAGGTCGTACTGCAAGAGGCCGTG 262836 Query 148487 GCTAGCGGG 148495 ||| ||||| Sbjct 262835 GCTCGCGGG 262827 >seq57 Length=1280291 Score = 143 bits (158), Expect = 3e-29 Identities = 154/202 (76%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTG 133520 ||| ||||| ||||| || |||||||| | | | | |||| |||||||||||||| Sbjct 959628 GGTCGACTCCTTCTGGATGTTGTAATC--CGAAAGAGTACGACCATCCTCGAGCTGCTTC 959685 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 |||||| | || | ||||||||||||||||||||||| |||||||| ||||| | Sbjct 959686 CCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCC 959745 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | || | |||||| | | ||| || |||| ||||| ||| |||||||| || Sbjct 959746 TTGACATTGTCGATCGTGTCCGACGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGG 959805 Query 133641 GTTTTTACGAAAATCTGCATGG 133662 || || ||||| |||||||||| Sbjct 959806 GTCTTGACGAAGATCTGCATGG 959827 Score = 93.3 bits (102), Expect = 4e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| || || || || || |||||||| | |||| |||||| |||||||| || Sbjct 958710 GGTCGATTCCTTTTGAATGTTGTAATCTTGAAGCGTGCGTCCGTCCTCAAGCTGCTTCCC 958769 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 |||| | || | |||||||||||||| |||||||| |||||||| ||||| ||| Sbjct 958770 CGCGAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTT 958829 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 || | || | |||||||| | ||| || |||| ||||| Sbjct 958830 GACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGA 958870 >seq59 Length=937750 Score = 114 bits (126), Expect = 1e-20 Identities = 96/116 (83%), Gaps = 4/116 (3%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520 ||| ||||||||||| || |||||||| | | | | |||| ||||||||||||||| Sbjct 936051 GGTCGACTCTTTCTGGATGTTGTAATC--CGAAAGAGTACGACCGTCCTCGAGCTGCTTC 935994 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| | ||||| ||||||||||||||||||||||| |||||||| |||||| Sbjct 935993 CCCGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTT 935938 Score = 95.1 bits (104), Expect = 1e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || || || |||| | |||| | |||||| ||||||||||| Sbjct 936360 GTCGACTCCTTCTGAATGTTATAGTCGCTGAGCGTGCGCCCGTCCTCAAGCTGCTTGCCG 936301 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || | ||||||||||| || || ||||| |||||||| ||||| |||| Sbjct 936300 GCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTG 936241 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 | | || | |||||||| | ||| || |||| ||||| Sbjct 936240 ACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGA 936201 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || || || |||| | |||| | |||||| ||||||||||| Sbjct 937522 GTCGACTCCTTCTGAATGTTATAGTCGCTGAGCGTGCGCCCGTCCTCAAGCTGCTTGCCG 937463 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || | ||||||||||| || || ||||| |||||||| |||||| |||| Sbjct 937462 GCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 937403 Query 133584 A 133584 | Sbjct 937402 A 937402 >seq12 Length=324675 Score = 102 bits (112), Expect = 8e-17 Identities = 96/120 (80%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||||||||||||||| |||||| | ||||||||||||||||||||||||||||| ||||| Sbjct 137439 GTCCTCGAGCTGCTTCCCCGCGAACATGAGCCGCTGCTGGTCGGGAGGGATGCCCTCCTT 137380 Query 133565 GTCGGTGATCTTTTGCTTGA-GCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 ||| |||||| ||||| | || || | |||| || || || || |||| |||| Sbjct 137379 GTCCTGGATCTTGGCCTTGACGATG-TCGATCGTGCTGGAGGACTTGACATCGAGAGTGA 137321 >seq4 Length=766227 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || ||||| || | ||| |||||||||||||||||| Sbjct 226661 GGTCGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 226720 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| ||||||||||| || |||||||| |||||||| |||||| ||| Sbjct 226721 GGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 226780 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 || | || | |||||| | | ||| || |||| ||||| Sbjct 226781 GACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGA 226821 >seq1 Length=1786154 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || ||||| || | ||| |||||||||||||||||| Sbjct 480059 GGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 480000 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 |||| | || | |||||||||||||| |||||||| |||||||| |||||| ||| Sbjct 479999 CGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 479940 Query 133583 GAGCTG 133588 || ||| Sbjct 479939 GACCTG 479934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420431391640