Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01- 27] 61 sequences; 20,750,089 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq57 109 5e-19 seq59 95.1 1e-14 seq4 84.2 2e-11 seq1 82.4 7e-11 >seq57 Length=1280291 Score = 109 bits (120), Expect = 5e-19 Identities = 144/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 35506 ATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATC 35565 ||||||||| || |||||||| || | || | || |||||||||||||||||||| Sbjct 958677 ATTTCCACCGCGCAACCTCAAAACGAGGTGCAGGGTCGATTCCTTTTGAATGTTGTAATC 958736 Query 35566 GGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGA 35625 | || || |||| || |||||||| ||||| || ||||| ||||||||||| | Sbjct 958737 TTGAAGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGG 958796 Query 35626 AGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATT 35684 || | || |||||||||| ||||| ||| | |||| | | ||||||| ||| | Sbjct 958797 CGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCGGACGACT 958855 Query 35685 CCACCTCCACCGTGATC 35701 | ||||| | |||||| Sbjct 958856 CGACCTCGAGGGTGATC 958872 Score = 105 bits (116), Expect = 6e-18 Identities = 144/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| | | || || | || || |||||||| ||||| || Sbjct 959634 CTCCTTCTGGATGTTGTAATCCGAAAGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAA 959693 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | ||| | || |||||||||| ||||| ||| | | | Sbjct 959694 GATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATT 959753 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| ||| || ||||| | ||||| || || || || | || || || Sbjct 959754 GTCGATCGTGTCCGACGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 959813 Query 35725 AAATATCTGCAT--TCTGTG 35742 || |||||||| |||||| Sbjct 959814 GAAGATCTGCATGGTCTGTG 959833 >seq59 Length=937750 Score = 95.1 bits (104), Expect = 1e-14 Identities = 128/176 (73%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| || | ||| |||||| |||||||| || ||| | || ||| |||| || Sbjct 936373 CACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTGAGCGTGCGCCCGTCCTC 936314 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 |||||||| || || || ||||| ||||||||||| | |||| || |||||||||| Sbjct 936313 AAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTG 936254 Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 ||||| ||| | |||| | | ||||||| ||| || ||||| | |||||| Sbjct 936253 AATCTTGGCCTTGA-CGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATC 936199 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| || | ||| |||||| |||||||| || ||| | || ||| |||| || Sbjct 937535 CACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTGAGCGTGCGCCCGTCCTC 937476 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 |||||||| || || || ||||| ||||||||||| | |||| || |||||||||| Sbjct 937475 AAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTG 937416 Query 35647 GATCTT 35652 |||||| Sbjct 937415 GATCTT 937410 >seq4 Length=766227 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| || | | || || |||| || |||||||| || ||||| Sbjct 226667 CTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 226726 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | || |||||||||| |||||| ||| | || Sbjct 226727 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 226785 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 || | | |||||| ||| || ||||| | |||||| Sbjct 226786 TGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGATC 226823 >seq1 Length=1786154 Score = 82.4 bits (90), Expect = 7e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | || || |||| || |||||||| ||||| || Sbjct 480053 CTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAA 479994 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 ||||| ||||||||||| | || | || |||||||||| |||||| Sbjct 479993 GATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 479946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793256269880