Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01-
27] 61 sequences; 20,750,089 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq11 176 6e-39
seq6 96.9 4e-15
>seq11
Length=389204
Score = 176 bits (194), Expect = 6e-39
Identities = 489/739 (66%), Gaps = 17/739 (2%)
Strand=Plus/Minus
Query 118830 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 118889
|| |||||||| |||||| | || | |||||||| |||| || ||| || || | |
Sbjct 262225 GCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGATGGCGTAC 262166
Query 118890 CAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTA 118948
|||| | || | || || | ||| ||||| || ||||| | ||| ||||| | |
Sbjct 262165 CAGAGCTTCTGG-GCGGGAATGGTGCGCTTGGCGCGACCCTCCTTCTCATACTTCTCGAA 262107
Query 118949 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 119008
|| | | ||||| || || | |||| ||| || ||||||| | ||||||||
Sbjct 262106 CAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCGGCAGGGCAGAA 262047
Query 119009 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 119068
||| | ||| | || || ||| || |||| |||||||||||| || |||||||| ||
Sbjct 262046 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCAGAGGGC 261987
Query 119069 CGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 119128
|||| | || || ||| | || || | || || || || | || | ||
Sbjct 261986 AAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 261927
Query 119129 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA-- 119186
|| | ||| || ||||||||||| || ||||| | |||| | ||| ||
Sbjct 261926 CTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTT 261867
Query 119187 -CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACC 119245
|| |||||| || || | ||| ||| ||| | || || ||||| || ||||| ||
Sbjct 261866 GCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGATGCC 261807
Query 119246 ATCGGATTGGCCATTTGTCCCC-CGAA-TACGAGACTTATTGGCTCTGACATCGTGGATG 119303
| || | ||| || || || ||| |||||| | | || | || | ||||||
Sbjct 261806 GTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGG--TCGCGCGGATGTTGTGGATC 261749
Query 119304 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAG 119363
| ||| || || || ||| ||| ||||| |||||||| | |||| || |||||
Sbjct 261748 GAGAGACCGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAG 261689
Query 119364 ATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG 119423
|| || ||||||||||| |||| | | || ||||||||| ||| | || ||
Sbjct 261688 ATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGC 261629
Query 119424 GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACC-TTGGGACATCTT 119482
|| || || ||||||||||| || || | ||||| | || |||| | |||||
Sbjct 261628 GGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGT-AAAGTACCGCTCCGACATGAG 261570
Query 119483 GTCGTAGGTCTCCAAGACGGCGGG---AATGTCTTCCCCGTGAATACCGATCGAGACCCG 119539
|| ||| ||||| || ||| | |||||| || ||||| || |||| || ||| ||
Sbjct 261569 GTTGTACGTCTC---GATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGACCGCGACACG 261513
Query 119540 CATAAACATGTATTGGGGT 119558
||| | ||||| || |||
Sbjct 261512 CATGAGCATGTGCTGCGGT 261494
>seq6
Length=733724
Score = 96.9 bits (106), Expect = 4e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 12072 GGGAACCTCAACGCCGAGAGGGACTGGGGACATGCCAAGGACTATGTTGAAGCCATGTGG 12131
|| |||||| |||| || | ||||||||||| || |||||||| || | |||||||
Sbjct 575696 GGTAACCTCGACGCGAAGCGCGACTGGGGACACGCTCGCGACTATGTCGAGGGCATGTGG 575637
Query 12132 CTCGTACTTCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCC 12191
| | | || || || || || | ||||| | |||| ||||||| || ||||| ||| ||
Sbjct 575636 CGCATGCTCCAGCAGGACCAGCCCGACGACTTTGTCCTCGCGACCGGCGAGACCCACCCC 575577
Query 12192 GTCAGGGAGTTCGTTGAG 12209
||| | |||||||| |||
Sbjct 575576 GTCCGCGAGTTCGTCGAG 575559
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618434728443160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |