Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01- 27] 61 sequences; 20,750,089 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq11 444 6e-120 >seq11 Length=389204 Score = 444 bits (492), Expect = 6e-120 Identities = 540/733 (74%), Gaps = 2/733 (0%) Strand=Plus/Minus Query 79170 GGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTC 79229 ||||||||||||| |||| | || | || ||||| ||||| || ||| | | ||| Sbjct 262226 GGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGATGGCGTA 262167 Query 79230 CCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCGGTA 79289 ||||| | | |||| | | |||| ||||||| | ||| || | | Sbjct 262166 CCAGAGCTTCTGGGCGGGAATGGTGCGCTTGGCGCGACCCTCCTTCTCATACTTCTCGAA 262107 Query 79290 CAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACAT 79349 || ||| ||||| | || || ||||| ||| | ||||| || |||| ||||| | Sbjct 262106 CAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCGGCAGGGCAGAA 262047 Query 79350 CAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGC 79409 ||| ||||||| ||| || ||| || ||||||||||||||| || ||||| ||||| Sbjct 262046 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCAGAGGGC 261987 Query 79410 CGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAA 79469 ||| | |||||| || | |||||| | ||| |||||| || || ||||| || Sbjct 261986 AAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 261927 Query 79470 GTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCC 79529 || | ||||||||||||||||||||| || ||||||||||||| ||| ||||||| Sbjct 261926 CTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTT 261867 Query 79530 GCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCC 79589 ||||||||||| |||||| || || ||||||||| | || ||||||||||| | |||||| Sbjct 261866 GCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGATGCC 261807 Query 79590 GTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTG 79649 || | | ||||||||| ||| ||| | ||| |||| || ||||| | | | | Sbjct 261806 GTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGTT-GTGGATCG 261748 Query 79650 -GATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGA 79708 || |||||||| |||| | |||||||||| |||||||| ||||||||| ||||||| Sbjct 261747 AGAGACCGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGA 261688 Query 79709 TGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGT 79768 ||||||||||||||||||||||||| | ||| |||||||| ||| | ||| |||| Sbjct 261687 TGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCG 261628 Query 79769 TCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGAT 79828 ||| |||||||||||||| ||||||| |||||||| ||| || | ||| || | Sbjct 261627 GCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACCGCTCCGACATGAGGT 261568 Query 79829 CGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGA 79888 ||||||||| | ||||| | ||||||||||||||||||||||||||| ||||||| Sbjct 261567 TGTACGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGACCGCGACACGCATGA 261508 Query 79889 AGAGGTACTGGGG 79901 | || ||| || Sbjct 261507 GCATGTGCTGCGG 261495 Score = 387 bits (428), Expect = 2e-102 Identities = 533/740 (72%), Gaps = 4/740 (1%) Strand=Plus/Plus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 || ||| || | ||||||| ||||||||||||||||| ||||||||| | ||| | Sbjct 261495 CCGCAGCACATGCTCATGCGTGTCGCGGTCGGCATCCACGGCGACGACATTGAGCGCGCG 261554 Query 19163 CGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTC 19222 |||||| ||| |||| ||| || || ||| |||||||| ||||||| || ||| Sbjct 261555 ATCGAGACGTACAACCTCATGTCGGAGCGGTACTTTACGCACGCCTCGCCGACGCTCTTC 261614 Query 19223 AACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGAC 19282 |||||||| ||| |||||||| | ||| || ||||| || | |||||||| ||| Sbjct 261615 AACGCCGGCACGCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAAGGACGAC 261674 Query 19283 AGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGG 19342 || |||||||||||||| ||||||||| |||||||| |||||||||| | |||| Sbjct 261675 TCGATCGAGGGCATCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACGGCCGGC 261734 Query 19343 GGTATCGGGATC-CACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAA 19401 || ||||| || | | | | || ||||| ||| || | ||| || ||||| Sbjct 261735 GGCATCGGTCTCTCGATCCAC-AACATCCGCGCGACCGGCTCGTACATCGCCGGCACGAA 261793 Query 19402 CGGAGTAGCCGA-CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACG 19460 ||| || ||| ||| ||| |||| ||||||||||| | ||||||||| || | |||| Sbjct 261794 CGGC-TACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACCGCGCGCTACG 261852 Query 19461 TCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACG 19520 || ||||||| ||| ||| ||| |||| |||||||||||||||||||||| ||||||| Sbjct 261853 TCGACCAGGGCGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGTGGCACG 261912 Query 19521 CGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTC 19580 | ||| || | || |||||||| || ||| |||||| || | |||||| | ||| | Sbjct 261913 CCGACATCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCGC 261972 Query 19581 GCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACG 19640 ||||| | ||| ||| | |||||||| ||||| ||||||||| || ||| || ||| Sbjct 261973 GCGACTTGTTCTTTGCCCTCTGGATTCCCGACCTCTTCATGGAGCGTGTCGAGCAGAACG 262032 Query 19641 AAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGG 19700 || |||| ||| | ||||| ||| || ||||| | ||| ||||||||||| | Sbjct 262033 GCGACTGGCCCCTCTTCTGCCCTGCCGAGGCACCCGGCCTCCACGAGGTCTACGGCGACG 262092 Query 19701 CGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGGG 19760 |||||| ||| ||| | || || | |||| || |||| | | | Sbjct 262093 AGTTCAAGGAGCTGTTCGAGAAGTATGAGAAGGAGGGTCGCGCCAAGCGCACCATTCCCG 262152 Query 19761 CCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGT 19820 ||| | | ||||| || | ||||| | |||||||||||| |||| || | |||| Sbjct 262153 CCCAGAAGCTCTGGTACGCCATCCTCGAGGCCCAGGTCGAGACGGGCAACCCCTTCATGC 262212 Query 19821 GCTACAAGGACGCCGCGAAC 19840 ||||||||||||||| ||| Sbjct 262213 TCTACAAGGACGCCGCCAAC 262232 Score = 199 bits (220), Expect = 4e-46 Identities = 561/857 (65%), Gaps = 56/857 (7%) Strand=Plus/Minus Query 78183 GGCGCGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTG 78242 |||||| || || | |||||||||||||||||||||||||||||||| ||||| | ||| Sbjct 263378 GGCGCGGGTACGGAGGTAGTACATGCCCGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTG 263319 Query 78243 CATACTCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTG 78302 ||| || |||| |||| |||| | | | || |||||||||||| ||||| Sbjct 263318 CATCGACGTGAGCTGCGCCATGGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACTG 263259 Query 78303 GTCGATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCA 78362 ||||||| |||| ||||||||||| | | ||||||||| ||| |||| |||||||| Sbjct 263258 GTCGATGAACGCTCCGCGGTCGGCGGAGAGGTCGATGACGACCTTCTGCGAGATCTCCCA 263199 Query 78363 GATGGTCCGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCAGCGCTTGTACGCTCCCACC 78422 | ||| ||| ||| ||| ||||| || |||| | | | | | || || Sbjct 263198 CACCGTCTTGTAGATGCGCTTGAGCTCATCAGGGATACCGGGGACGTTCTGGATCGAGCC 263139 Query 78423 G--GCTCGC-ACAATTTCATTCTTAATTTGAGGGTTCCAGCGATTGATCTTCTGAAGATC 78479 | | ||| | || ||||| || |||||| | | | || || Sbjct 263138 GTTGTGCGCGATGATCGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTCGACGAGGTC 263079 Query 78480 CCGGACCAGGTGCC---GGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTA 78536 ||| ||| ||| |||| | | |||||||||||| ||| ||||| ||| Sbjct 263078 GCGG---AGGAGCCAGGGGTTGACGACTTGGAACTCGCCGGCGAGGACACGGCGGGTGTA 263022 Query 78537 GATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGC 78596 |||||||| ||||||||||||||| ||||||||| || | |||||| |||||| || Sbjct 263021 GATGTTGGACGTGTACGGCTCGAACGCCTCGTTGAAGCCAAGGATCTGACTGGTCGACGC 262962 Query 78597 GGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTT 78656 ||||||||| || ||| | || || || || | || ||| | |||| |||| Sbjct 262961 GGTCGGCATCGGCGCGCAGACGAGCGAGTTGCGGATGCCGTGCTGCGCAATCTTCTCCTT 262902 Query 78657 ----TAGGCC--GTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGAT 78710 | |||| |||||| | || ||| || || ||||| ||| || | || Sbjct 262901 CAACTCGGCCCAGTCCCACAGGTCCGTCGGCGTGACGTTCCACAGGTCGTACTGCAAGAG 262842 Query 78711 ACCCTCGGACGCCGGCGA---------CCCCTTGAACGTCTCGTAAGATCCCTCCTC--- 78758 || | | ||| ||||| | ||||| ||| ||| | || ||| Sbjct 262841 GCCGTGGCTCGCGGGCGAGCCGCCGTTCTCCTTGTACGAGGGGTACCAGCCGGGCTCGCC 262782 Query 78759 ---CTTGGCGA----GT--TCGC---------------ATGACTCGAGCAGGGCCGCGTG 78794 | ||||| || |||| | ||||||| | || ||||| Sbjct 262781 GGGGTGGGCGATGGCGTAGTCGCGGGCCATGTCGCACGACGACTCGATC---GCGGCGTG 262725 Query 78795 GTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAG 78854 ||| | | ||||||||| |||||| | |||||||| || | |||||||| || Sbjct 262724 GTAGATCGTCTCGAAGATCTGGACGTTGAGGTGGCGCGCCTCGGGCGAGTCGAACGGCAG 262665 Query 78855 GCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCG 78914 | ||| ||||||| | ||||| || ||||| || |||||| ||||||| |||||||| Sbjct 262664 ACGGAGGGCCATGAAGGCGTCGGCGAGACCCTGCACACCGATACCGATCGGGCGGTGGCG 262605 Query 78915 CATGTTGCT-CTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCCGATCGATGACGCGGTTCA 78973 | |||||| | || |||| ||| | ||||| |||| ||||||| |||||||| Sbjct 262604 GAAGTTGCTGCGCTC-GGCCTCCTTGACGGGGTAGTAGTTGACGTCGATGATGCGGTTCA 262546 Query 78974 GGTTACGCGTGACGACC 78990 ||| |||||||||| Sbjct 262545 AGTTGTACGTGACGACC 262529 Score = 196 bits (216), Expect = 5e-45 Identities = 561/860 (65%), Gaps = 62/860 (7%) Strand=Plus/Plus Query 20014 GGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCCGACCGAGGCGGC 20073 |||||||||| || |||| ||| ||||||| |||| ||||| | ||| ||| Sbjct 262529 GGTCGTCACGTACAACTTGAACCGCATCATCGACGTCAACTACTACCCCGTCAAGGAGGC 262588 Query 20074 ---GCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGA 20130 ||||| || | |||||||| ||||||| ||||| || ||||| || ||||| Sbjct 262589 CGAGCGCAGC---AACTTCCGCCACCGCCCGATCGGTATCGGTGTGCAGGGTCTCGCCGA 262645 Query 20131 CGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAACAAGGG 20190 || |||||| ||| | || | |||||| ||| |||||||| | |||||| Sbjct 262646 CGCCTTCATGGCCCTCCGTCTGCCGTTCGACTCGCCCGAGGCGCGCCACCTCAACGTCCA 262705 Query 20191 CATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGA--------------A 20236 ||||||||| | | |||||||| || || | |||||||| | Sbjct 262706 GATCTTCGAGACGATCTACCACGCCGCGATCGAGTCGTCGTGCGACATGGCCCGCGACTA 262765 Query 20237 C----TCGCCAAA------GAGGACGGCCCGTACGAGACGTTCAAGGGG---------TC 20277 | ||||| | ||| |||| |||| ||| ||||| | || Sbjct 262766 CGCCATCGCCCACCCCGGCGAGCCCGGCTGGTACCCCTCGTACAAGGAGAACGGCGGCTC 262825 Query 20278 GCCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCACTGAGAATGAGTTTTG 20337 ||||||| | | || || | ||| ||| ||||| |||||| || || | || Sbjct 262826 GCCCGCGAGCCACGGCCTCTTGCAGTACGACCTGTGGAACGTCACGCCGACGGACCTGTG 262885 Query 20338 GAGC---GCCC---TCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGT 20391 | | ||| | |||| |||| | ||||| | ||||||||| | || Sbjct 262886 GGACTGGGCCGAGTTGAAGGAGAAGATTGCGCAGCACGGCATCCGCAACTCGCTCGTCTG 262945 Query 20392 CGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCC 20451 |||||| ||||||||||| |||||| |||||| | || ||||||||| |||||||| Sbjct 262946 CGCGCCGATGCCGACCGCGTCGACCAGTCAGATCCTTGGCTTCAACGAGGCGTTCGAGCC 263005 Query 20452 GTACACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAA 20511 ||||||| ||||||||||| || ||| || ||||| |||||| | || ||| Sbjct 263006 GTACACGTCCAACATCTACACCCGCCGTGTCCTCGCCGGCGAGTTCCAAGTCGTCAACC- 263064 Query 20512 GCACCTGG----TCCGCGACTTGCAGAAGATCGATATGTGGTCGCCCAAAATTAAGAATG 20567 ||||| |||||||| | | || ||||| | || ||||| Sbjct 263065 ---CCTGGCTCCTCCGCGACCTCGTCGACCGCGGCCTGTGGAACGACGCGATGAAGAACA 263121 Query 20568 AAATTGTC-CGAGC--CGGCGGGAGCGTCCAGGCATTG---GATATCCCCCAGAACCTCA 20621 || || || | |||| || ||||| | | |||||| | | |||| Sbjct 263122 CGATCATCGCGCACAACGGCTCGA---TCCAGAACGTCCCCGGTATCCCTGATGAGCTCA 263178 Query 20622 AGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGGCCG 20681 || ||| |||| ||| || ||||| ||| | |||||| | |||||||| | | |||| Sbjct 263179 AGCGCATCTACAAGACGGTGTGGGAGATCTCGCAGAAGGTCGTCATCGACCTCTCCGCCG 263238 Query 20682 ATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGAGCC 20741 | ||||| || | |||||||||||| ||||||||||| ||| | | | |||| | Sbjct 263239 ACCGCGGAGCGTTCATCGACCAGTCGCAGTCGCTCAACGTCCACCTCTCGTCGCCGACCA 263298 Query 20742 TGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATGT 20801 ||||| |||| | || ||||| | ||||||||| | ||||| |||||||||||||||| Sbjct 263299 TGGCGCAGCTCACGTCGATGCACTTCTACGGCTGGAAGAAGGGTCTCAAGACGGGCATGT 263358 Query 20802 ACTATCTGCGGACCCGAGCC 20821 |||| || || ||||| ||| Sbjct 263359 ACTACCTCCGTACCCGCGCC 263378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524381749840